| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,075,266 – 10,075,356 |
| Length | 90 |
| Max. P | 0.627532 |
| Location | 10,075,266 – 10,075,356 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 74.79 |
| Shannon entropy | 0.52472 |
| G+C content | 0.42430 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -15.39 |
| Energy contribution | -15.67 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10075266 90 + 24543557 CCCUUUUGUUGCAAAUAAAUUAAGUGCAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAGCG-----CAGAAAUACACA--------------- ...((((((.((..(((((.((((((.((((...((..(......)..))...)))).)))))).))))).....)))-----))))).......--------------- ( -20.80, z-score = -0.13, R) >droSec1.super_0 2290491 90 + 21120651 CCCUUUUGUUGCAAAUAAAUUAAGUGCAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAGCA-----CAGAAAUACACG--------------- ......(((((...(((((.((((((.((((...((..(......)..))...)))).)))))).)))))...)))))-----............--------------- ( -21.20, z-score = -0.80, R) >droSim1.chr3L 9455451 90 + 22553184 CCCUUUUGUUGCAAAUAAAUUAAGUGGAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAGCA-----CAGAAAUACACG--------------- ......(((((...(((((.(((((((((((...((..(......)..))...))))))))))).)))))...)))))-----............--------------- ( -25.10, z-score = -2.31, R) >droYak2.chr3L 10053567 90 + 24197627 CCCUUUUGUUGCAAAUAAAUUAAGUGCAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAGCA-----CAGAUAUACACG--------------- ......(((((...(((((.((((((.((((...((..(......)..))...)))).)))))).)))))...)))))-----............--------------- ( -21.20, z-score = -0.91, R) >droEre2.scaffold_4784 10054770 90 + 25762168 CCCUUUUGUUGCAAAUAAAUUAAGAGCAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAGCA-----CAGAAAUACACG--------------- ...((((((.((........(((((..((((((.((((..(((....))).))))..)))))).)))))......)))-----))))).......--------------- ( -19.74, z-score = -0.62, R) >droAna3.scaffold_13337 14986387 94 + 23293914 -CCCUUUUUUGAAAAUAAAUUAAGUGCCGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAGCA-----GAGAAACACACACCCUU---------- -..((((.(((...(((((.((((((..(((...((..(......)..))...)))..)))))).)))))...))).)-----)))..............---------- ( -18.70, z-score = -0.32, R) >dp4.chrXR_group6 5749627 71 - 13314419 CCCUUUUGUUGGAAAUAAAUUAAGUGCAGGCAG-------------------UGCUUUCGCUUAUUUUGUAAACAGAA-----CAGAAACACGCC--------------- ...(((((((....(((((.((((((.((((..-------------------.)))).)))))).))))).)))))))-----............--------------- ( -15.00, z-score = -0.83, R) >droPer1.super_27 893527 71 + 1201981 CCCUUUUGUUGGAAAUAAAUUAAGUGCAGGCAG-------------------AGCUUUCGCUUAUUUUGUAAACAGAA-----CAGAAACACGCC--------------- ...(((((((....(((((.((((((.((((..-------------------.)))).)))))).))))).)))))))-----............--------------- ( -15.00, z-score = -1.06, R) >droWil1.scaffold_181024 1009074 95 - 1751709 CCCUUUUGUUGCAAAUGAAUUAAGUGCAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAGAGAACAGCAGAAACGUUCA--------------- ....(((((((((((.....((((((.((((...((..(......)..))...)))).)))))).))))).))))))((((.........)))).--------------- ( -23.10, z-score = -0.34, R) >droVir3.scaffold_13049 15845661 103 + 25233164 ACAUUUUGUUGCAAAUAAAUUAAGUGCAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCCUAUUUUGUAAACAAGCG--UGCAGUGUCGCGCGGCGGGACCUG----- ...(((((((((...............((((((.((((..(((....))).))))..)))))).............(((--........))))))))))))....----- ( -28.70, z-score = 0.62, R) >droMoj3.scaffold_6680 3802982 108 - 24764193 ACGUUUUGUUGCAAAUAAAUUAAGUGCAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAAGCG--CUUGGCGGCAGGAGGCGAGGCAGGGCACG ..(((((((..(.......((((((((((((((.((((..(((....))).))))..))))))...(((....))))))--)))))..((.....)))..)))))))... ( -31.70, z-score = -0.19, R) >droGri2.scaffold_15110 11767541 108 - 24565398 ACAUUUUGUUGCAAAUAAAUUAAGUGCAGGCGACGUUGAGGCUUAUUGGCAAUGCUUUCGCUUAUUUUGACAACAAGUGCGUGAAGGAGAAGAGCGGAAGUCGACUUG-- .((((((((((((((.....((((((.(((((..((..(......)..))..))))).)))))).)))).)))))))...)))...(((..((.(....)))..))).-- ( -27.10, z-score = -0.19, R) >consensus CCCUUUUGUUGCAAAUAAAUUAAGUGCAGGCGACGUUGAGGCUUAUUGGCACAGCUUUCGCUUAUUUUGUAAACAGCA_____CAGAAACACACG_______________ .....(((((....(((((.((((((.((((...((..(......)..))...)))).)))))).))))).))))).................................. (-15.39 = -15.67 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:59 2011