Locus 6817

Sequence ID	dm3.chr3L
Location	10,049,198 – 10,049,252
Length	54
Max. P	0.906238

overview

Window 4

Location	10,049,198 – 10,049,252
Length	54
Sequences	5
Columns	54
Reading direction	forward
Mean pairwise identity	97.41
Shannon entropy	0.04472
G+C content	0.51111
Mean single sequence MFE	-16.96
Consensus MFE	-17.20
Energy contribution	-16.96
Covariance contribution	-0.24
Combinations/Pair	1.06
Mean z-score	-1.38
Structure conservation index	1.01
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.19
SVM RNA-class probability	0.906238
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 10049198 54 + 24543557
AUAUGAGAGGACGUGCAUCCGUACACGGCACUUUUACGCUGCGUUGGCAGUGAA
...((((((..((((........))))...))))))((((((....)))))).. ( -17.80, z-score =  -1.73, R)
>droSim1.chr3L 9436915 54 + 22553184
AUAUGAGAGGACGUGCAUCCGUAUACGGCACUUUUACGCUGCGUUGGCAGUGAA
...((((((..((((........))))...))))))((((((....)))))).. ( -15.70, z-score =  -1.04, R)
>droSec1.super_0 2272184 54 + 21120651
AUAUGAGAGGACGUGCAUCUGUACACGGCACUUUUACGCUGCGUUGGCAGUGAA
...((((((..((((........))))...))))))((((((....)))))).. ( -17.80, z-score =  -1.90, R)
>droYak2.chr3L 10027757 54 + 24197627
AUAUGAGAGGACGUGCGUCCGUACACGGCACUUUUACGCUGCGUUGGCAGUGAA
...((((((..((((........))))...))))))((((((....)))))).. ( -17.80, z-score =  -1.20, R)
>droEre2.scaffold_4784 10036318 54 + 25762168
AUAUGAGAGGACGUGCAUCCGUAUACGGCACUUUUACGCUGCGUUGGCAGUGAA
...((((((..((((........))))...))))))((((((....)))))).. ( -15.70, z-score =  -1.04, R)
>consensus
AUAUGAGAGGACGUGCAUCCGUACACGGCACUUUUACGCUGCGUUGGCAGUGAA
...((((((..((((........))))...))))))((((((....)))))).. (-17.20 = -16.96 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:56 2011