| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,008,002 – 10,008,054 |
| Length | 52 |
| Max. P | 0.735224 |
| Location | 10,008,002 – 10,008,054 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 67.91 |
| Shannon entropy | 0.55942 |
| G+C content | 0.43901 |
| Mean single sequence MFE | -8.18 |
| Consensus MFE | -4.22 |
| Energy contribution | -4.82 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10008002 52 + 24543557 AGAAUCAGCUUGCGCUGAUUAGACGACUUAUCCUUCUCACUCC-AAUCCAUUC--- ..(((((((....))))))).......................-.........--- ( -8.40, z-score = -1.46, R) >droSim1.chr3L 9395158 52 + 22553184 AGAAUCAGCUUGCGCUGAUUAGACAACUUAUCCUUCUCAUUCC-ACUCCUUUC--- ..(((((((....))))))).......................-.........--- ( -8.40, z-score = -2.01, R) >droSec1.super_0 2231091 52 + 21120651 AGAAUCAGCUUGCGCUGAUUAGACAACUUAUCCUUCUUACUCC-ACUCCUUUC--- ..(((((((....))))))).......................-.........--- ( -8.40, z-score = -2.21, R) >droEre2.scaffold_4784 9993129 52 + 25762168 AGAUUCAGCUUGCGUUGAUUAGACAACUUAUCCAGCUCACUCC-AAUCCUUCC--- .((((.....((.((((..(((.....)))..)))).))....-)))).....--- ( -4.50, z-score = 0.23, R) >droWil1.scaffold_180698 7662359 56 + 11422946 GGUUUUAACAUGCCGCCGUGAUGUAACUGUUGCCGUCAACUUUUAGUUGGCUUGUC (((........)))...(..((......))..).((((((.....))))))..... ( -11.20, z-score = -0.24, R) >consensus AGAAUCAGCUUGCGCUGAUUAGACAACUUAUCCUUCUCACUCC_AAUCCUUUC___ ..(((((((....))))))).................................... ( -4.22 = -4.82 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:53 2011