| Sequence ID | dm3.chr3L |
|---|---|
| Location | 10,002,433 – 10,002,525 |
| Length | 92 |
| Max. P | 0.795553 |
| Location | 10,002,433 – 10,002,525 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.01 |
| Shannon entropy | 0.47668 |
| G+C content | 0.46887 |
| Mean single sequence MFE | -27.45 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.09 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 10002433 92 + 24543557 GAAACGUUGCUGGCAUCUAAAGUGGCUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGGCCACCGAGCUCU--GAGCUACGGAAAAU--------------- ....(((.((((((.((....((((((((.....))..(((((((.((......)).))))))))))))).)))))..--.))).)))......--------------- ( -26.90, z-score = -1.26, R) >droSim1.chr3L 9389723 92 + 22553184 GAAACGUUGCUGGCAUCUAAAGUGGCUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGGCCAGCGAGCUCUC--CGCUACGGAAAAU--------------- ......((((((((..((((.((....))..))))..((((((((.((......)).))))))))))))))))....((--((...))))....--------------- ( -27.90, z-score = -1.25, R) >droSec1.super_0 2225566 92 + 21120651 GAAACGUUGCUGGCAUCUAAAGUGGCUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGGCCAGCGAGGUCUC--CGCUACGGAAAAU--------------- ...((.((((((((..((((.((....))..))))..((((((((.((......)).)))))))))))))))).)).((--((...))))....--------------- ( -30.50, z-score = -2.17, R) >droYak2.chr3L 9978892 94 + 24197627 GAAACGUUGCUGGCAUCUAAAGUGGCUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGCGCAGCGAGCUCUCCGAGCUACGGAAAAU--------------- ....(((.(((((.......(((.((((((.......((((((((.((......)).))))))))))))))..)))..)).))).)))......--------------- ( -27.31, z-score = -0.51, R) >droEre2.scaffold_4784 9987583 92 + 25762168 GAAACGUUGCUGGCAUCUAAAGUGGCUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGGCCAACGAGCUCGC--CGCUACGGAAAAU--------------- ....(((.((.(((..((....(((((((.....))..(((((((.((......)).))))))))))))...))...))--))).)))......--------------- ( -27.10, z-score = -1.02, R) >droAna3.scaffold_13337 14919496 81 + 23293914 AAAACGUUGCUGGCAUCUAAAGUGGCUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGGGUC-CUGGCCCAG-AGA-------------------------- .(((((((((.(.(((.....))).).)))))..))))(((((((.((......)).)))))))((((.-...))))..-...-------------------------- ( -25.20, z-score = -1.57, R) >dp4.chrXR_group6 5668162 108 - 13314419 AGAACGUUGCUGGCAUCUAAAGUGGCUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGAGGCACUGGGCUCU-GGGCUACGGGCUCUGUGCCCCGUGCUCUG .(((((((((.(.(((.....))).).)))))..))))(((((((.((......)).)))))))(((.(((.((((.(.-((((.....)))).).)))).)))))).. ( -41.00, z-score = -2.23, R) >droWil1.scaffold_180698 7656907 76 + 11422946 GAAACGUUGUUGGCAUCUAAAGUGGCUACGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGGCCAGCAGCAG--------------------------------- .....(((((((((.........(((((....)))))((((((((.((......)).)))))))))))))))))..--------------------------------- ( -26.70, z-score = -3.42, R) >droVir3.scaffold_13049 9125206 81 + 25233164 GAAACGUUGCUGGCAUCUAAAGUGGUUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCCACCAUCGCGGCAGCCG---------------------------- ...........(((..(......)((((((((..((..(((((((.((......)).))))))).)).)))))))).))).---------------------------- ( -22.80, z-score = -0.90, R) >droMoj3.scaffold_6680 18544873 96 - 24764193 -AAACGUUGCUGGCAUCUAAAGUGGUUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGACGCCGACGACGCCGCGACGACGCAGCGCAGACG------------ -....((((.((((.(((((.(.((((((((((((....)))..)))))))))....).))))).)))).))))((.(((....))).)).......------------ ( -28.40, z-score = 0.04, R) >droGri2.scaffold_15110 4898032 74 + 24565398 AGAACGUUGCUGGCAUCUAAAGUGGUUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAAUGACCACCGGCGAG----------------------------------- ....(((((.((((((.......((((((((((((....)))..)))))))))......))).))).)))))..----------------------------------- ( -18.12, z-score = -0.78, R) >consensus GAAACGUUGCUGGCAUCUAAAGUGGCUGCGAUUAGUUUGCUAAUGUUGUAAUUUCAUCAUUGGCGGCCAGCGAGCUCUC__CGCUACGGAAAAU_______________ .(((((((((.(.(((.....))).).)))))..))))(((((((.((......)).)))))))............................................. (-16.33 = -16.09 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:50 2011