| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,717,523 – 4,717,616 |
| Length | 93 |
| Max. P | 0.886357 |
| Location | 4,717,523 – 4,717,616 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 86.44 |
| Shannon entropy | 0.26033 |
| G+C content | 0.49341 |
| Mean single sequence MFE | -28.85 |
| Consensus MFE | -19.72 |
| Energy contribution | -21.55 |
| Covariance contribution | 1.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.886357 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4717523 93 + 23011544 CAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCCCAUACCGAUUGCGGCAUGCCACUGCAGUUCCAUAUUC-ACUCGGAAAU- .........(((((((..((((...(((((((((.(((...(((......))).))).))))))))).))))...........-...)))))))- ( -31.59, z-score = -3.04, R) >droAna3.scaffold_12943 1917616 91 - 5039921 CAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGUGUCCCACAC--AAUGCCGCAUUCCAUUCCA--UCUGAGUUCUAUAAUAUCACU ...((((........((((((......))))))......((((.....)))--)..................--..))))............... ( -13.00, z-score = -0.10, R) >droEre2.scaffold_4929 4792139 93 + 26641161 CAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCUCAUACCGACUGCGGCAUGCCACUCCAGUACCAUAUUC-ACUCGGAUAU- ............((((..((......((((((((.((....(((......)))..)).))))))))((....))........)-)..))))...- ( -24.80, z-score = -1.73, R) >droYak2.chr2L 4725025 94 + 22324452 CAUUUCGCAAUUUCCGCAUGCAAUUUGGCGUGCCGCAAAUGCGGGCCAUACCGACUGCGGCAUGCCACUCCAGUUCCAUAUUCCACUCGGAAAU- .........(((((((..((.(((.((((((((((((....(((......)))..))))))))))))............))).))..)))))))- ( -34.02, z-score = -2.94, R) >droSec1.super_5 2793971 93 + 5866729 CAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCCCAUACCGAUUGCGGCAUGCCACUGCAGUUCCAUAUGC-ACUCGGAAAU- .........(((((((..((((....((((((((.(((...(((......))).))).))))))))((....))......)))-)..)))))))- ( -33.40, z-score = -2.90, R) >droSim1.chr2L 4585983 93 + 22036055 CAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCCCAUGCCGAUUGCGGCAUGCCACUGCAGUUUCAUAUGC-ACUCGGAAAU- .........(((((((..((((....((((((((.(((...((((....)))).))).))))))))((....))......)))-)..)))))))- ( -36.30, z-score = -3.15, R) >consensus CAUUUCACAAUUUCCGCAUGCAAUUUGGCGUGCCACAAAUGCGGCCCAUACCGAUUGCGGCAUGCCACUCCAGUUCCAUAUUC_ACUCGGAAAU_ .........(((((((....)....(((((((((.((....(((......)))..)).))))))))).....................)))))). (-19.72 = -21.55 + 1.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:16 2011