Locus 6808

Sequence ID	dm3.chr3L
Location	9,984,659 – 9,984,749
Length	90
Max. P	0.749843

overview

Window 1

Location	9,984,659 – 9,984,749
Length	90
Sequences	4
Columns	91
Reading direction	forward
Mean pairwise identity	86.74
Shannon entropy	0.21957
G+C content	0.28516
Mean single sequence MFE	-14.97
Consensus MFE	-10.44
Energy contribution	-11.75
Covariance contribution	1.31
Combinations/Pair	1.07
Mean z-score	-2.15
Structure conservation index	0.70
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.58
SVM RNA-class probability	0.749843
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 9984659 90 + 24543557
-AAAAAUUGUAUAUUUCCCUUUUCAUAAACAAGUUCCUAAUAUAAAAGUAUUAAAUUGCACUUUUUGUACGAUUUAAUCUGUAUUCCAGCC
-.....((((.(((..........))).))))(((...(((((...((.(((((((((.((.....)).))))))))))))))))..))). (  -8.10, z-score =  -0.69, R)
>droYak2.chr3L 9960843 88 + 24197627
AAAAAAUGGGACAUUUCCCUUUCCAGAAGCAAGUUUCUAAUA-AAAGGGAUUAAAACGUACUUUUU--UCGAUUUAAUCUGUAUUGCCGAC
.......((((....)))).....(((((....)))))....-..(.((((((((.((........--.)).)))))))).)......... ( -14.10, z-score =  -0.09, R)
>droSec1.super_0 2207962 90 + 21120651
-AAAAAUUGCAUAUUUCCCUUUUCAGAACCAAGUUCCUAAUAUAAAAGGAUUAAAUUGUACUUUUUGUACGAUUUAAUCUGUAUUACUGCC
-.......(((..............((((...)))).((((((....((((((((((((((.....)))))))))))))))))))).))). ( -19.70, z-score =  -4.26, R)
>droSim1.chr3L_random 463892 90 + 1049610
-AAAAAUUCUAUAUUUCCCUUUCCAGAAGCAAGUUCCUAAUAUAAAAGGAUUAAAUUGUACUUUUUGUACGAUUUAAUCUGUAUUACUGCC
-...........................(((.((....(((((....((((((((((((((.....)))))))))))))))))))))))). ( -18.00, z-score =  -3.55, R)
>consensus
_AAAAAUUGUAUAUUUCCCUUUCCAGAAGCAAGUUCCUAAUAUAAAAGGAUUAAAUUGUACUUUUUGUACGAUUUAAUCUGUAUUACUGCC
...............................................((((((((((((((.....))))))))))))))........... (-10.44 = -11.75 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:45 2011