| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,961,566 – 9,961,619 |
| Length | 53 |
| Max. P | 0.853404 |
| Location | 9,961,566 – 9,961,619 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 75.98 |
| Shannon entropy | 0.42692 |
| G+C content | 0.42843 |
| Mean single sequence MFE | -6.68 |
| Consensus MFE | -5.24 |
| Energy contribution | -4.32 |
| Covariance contribution | -0.92 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853404 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9961566 53 + 24543557 CCACAAGCAGCCACACCAAUCCCAAAGUUUCA-UUUAUUAGUUUAGUGGCGAGU .........(((((..................-............))))).... ( -6.71, z-score = -1.44, R) >droYak2.chr3L 9937356 53 + 24197627 CCAAGCGCAGCCACACCAAUCCCACAGUUCGA-UUUAUUCGUUUAGUGGCGAGA ...................((((((.(..(((-.....)))..).)))).)).. ( -9.30, z-score = -1.20, R) >droSec1.super_0 2185122 53 + 21120651 CCGCAACCAGCCACACCAAUCCCAAAGUUCCA-UUUAUUAGUUUAGUGGCUAGU .....((.((((((..................-............)))))).)) ( -7.81, z-score = -2.12, R) >droSim1.chr3L 9340077 54 + 22553184 CCACAAGCAGCCACACCAAUCCCAAAGUUCCAAUUUAUUAGUUUAGUGGCUAGU ......((((((((...............................)))))).)) ( -7.48, z-score = -1.83, R) >anoGam1.chr2L 2540667 50 + 48795086 CUACAAGCAGUUCUGCCAGUUCCGAAUGUUCAAUUU-UUAGUUUAAUAAUU--- ......(((....)))....................-..............--- ( -2.10, z-score = 0.85, R) >consensus CCACAAGCAGCCACACCAAUCCCAAAGUUCCA_UUUAUUAGUUUAGUGGCUAGU .........(((((...............................))))).... ( -5.24 = -4.32 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:44 2011