| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,916,281 – 9,916,380 |
| Length | 99 |
| Max. P | 0.703101 |
| Location | 9,916,281 – 9,916,380 |
|---|---|
| Length | 99 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 66.23 |
| Shannon entropy | 0.62450 |
| G+C content | 0.37999 |
| Mean single sequence MFE | -17.53 |
| Consensus MFE | -9.44 |
| Energy contribution | -9.14 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9916281 99 + 24543557 -UCUUUGCACGUGGUCGCAUUUCUCCAUUUUUUU------------UUGCGUCUGAUUGUCUUAUUAUGCGUUAUAAAUCGCAUGACGACUGUUAAACUGACUUUGAAUGCU---- -.....(((((.(((((((...............------------.)))((.((((.(((...(((((((........))))))).))).)))).)).)))).))..))).---- ( -21.49, z-score = -1.82, R) >droAna3.scaffold_13337 14846521 88 + 23293914 ----------------AAACUUGUGUAUUUUUUU------------UUCAGUCUGAUUGUCUUAUUAUGCGUUAUAAAUCGCCUGAUGACUGUUAAACUGACUUUCAAUGGUAUCC ----------------..................------------.(((((.((((.(((..((((.(((........))).))))))).)))).)))))............... ( -15.20, z-score = -1.89, R) >droEre2.scaffold_4784 9907566 105 + 25762168 CUUUUUGCACGUGGCCGCACUUCCCCAUUCGUUCC-------UUUUUCACGUCUGAUUGUCUUAUUAUGCGUUAUAAAUCGCAUGACGACUGUUAAACUGACUUUGAAUGCU---- ......((..(((....)))..........((((.-------....(((.((.((((.(((...(((((((........))))))).))).)))).)))))....)))))).---- ( -19.20, z-score = -1.04, R) >droYak2.chr3L 9892862 112 + 24197627 UUCUUUGCACGUGGCCGCAUUUCUCCAUUUCUUUCUUUUACUUUUUCUCCGUCUGAUUGUCUUAUUAUGCGUUAUAAAUCGCAUGACGACUGUUAAACUGUCUUUGAAUGCU---- ......(((.((((..........))))......................((.((((.(((...(((((((........))))))).))).)))).))..........))).---- ( -16.10, z-score = -0.76, R) >droSec1.super_0 2148321 102 + 21120651 -UCUUUGCACGUGGGCGCAUUUCUCCAUUUUUUU---------UUUGUUCGUCUGAUUGUCUUGUUAUGCGUUAUAAAUCGCAUGACGACUGUUAAACUUAGUUUGAAUGCU---- -.....(((..(..(((((...............---------..)))..((.((((.(((..((((((((........))))))))))).)))).))...))..)..))).---- ( -21.13, z-score = -0.95, R) >droSim1.chr3L 9302178 101 + 22553184 -UCUUUGCACGUGGGCGCAUUUCUUCAUUUUUUU---------UU-GUUCGUCUGAUUGUCUUAUUAUGCGUUAUAAAUCGCAUGACGACUGUUAAACUGACUUUGAAUGCU---- -.....((......))((((((............---------..-(((.((.((((.(((...(((((((........))))))).))).)))).)).)))...)))))).---- ( -19.23, z-score = -0.62, R) >droVir3.scaffold_13049 9045169 81 + 25233164 --------------------GUGUGGGCGCAUUUG-----------UUUCGUCCGAUUGUCUUAUUAUGCGGUAUAAAUUGUAUGACGGCUGUUAAACA-GACUUAAAUCGGU--- --------------------(((....))).....-----------......((((((......(((((((((....))))))))).(((((.....))-).))..)))))).--- ( -16.40, z-score = 0.31, R) >droMoj3.scaffold_6680 18467074 81 - 24764193 --------------------CUUUAAAAGUCUUUG-----------UUUCGUCCGAUUGUCUUAUUAUGCGUUAUAAAUCGCACGACGGCUGUUAAACA-GGCUUAAAUCUCU--- --------------------......((((((..(-----------(((((.(((.((((........(((........)))))))))).))..)))))-)))))........--- ( -12.80, z-score = -0.31, R) >droGri2.scaffold_15110 4819253 81 + 24565398 --------------------GUGUGGGCGCUUCUA-----------UUUCGUCCGAUUGUCUUAUUAUGCGUUAUAAAUUGUAUGACGGCUGUUAAACA-GACUUAAAUCGGU--- --------------------(((....))).....-----------......((((((((((..(((.((((((((.....)))))).))...)))..)-)))...)))))).--- ( -15.90, z-score = -0.03, R) >droWil1.scaffold_180698 5034243 92 - 11422946 ----------UGUUUUCCAUGUGUGGGCGCAUUUG-----------UCUUGUCCGAUUGUCUUAUUAUGCGUUAUAAAUCGUCUGAUGGUUGUUAACCAUGACUUAAAUCGGC--- ----------........(((((....)))))...-----------......((((((......(((((.((((..((((((...))))))..)))))))))....)))))).--- ( -17.80, z-score = 0.01, R) >consensus __________GUGG_CGCAUUUCUCCAUUUUUUU____________UUUCGUCUGAUUGUCUUAUUAUGCGUUAUAAAUCGCAUGACGACUGUUAAACUGACUUUGAAUGCU____ ..................................................((..(((.(((...(((((((........))))))).))).)))..)).................. ( -9.44 = -9.14 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:43 2011