| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,912,797 – 9,912,898 |
| Length | 101 |
| Max. P | 0.665393 |
| Location | 9,912,797 – 9,912,898 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.05 |
| Shannon entropy | 0.39172 |
| G+C content | 0.42467 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -18.76 |
| Energy contribution | -18.40 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.665393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9912797 101 - 24543557 UUUAUCCUGCGGGUUAACUCGAUUUCCGGUUGGAUGCGCUUUUGUUUGUGUC--------GGUGACCGGAAAUUAGUUUCGUAUAUUCAUUGCCUCUUGUUCACGCCAU .......(((((...((((.((((((((((((...((((........)))).--------..))))))))))))))))))))).......................... ( -24.00, z-score = -0.34, R) >droSim1.chr3L 9298769 101 - 22553184 UUUAUCCUGCGGGUUAACUCGAUUUCCGGUUGGAUGCGCUUUUGUUUGUGUC--------GGUGACCGGAAAUUAGUUUCGUAUAUUCAUUGCCUCUUGUUCACGCCAU .......(((((...((((.((((((((((((...((((........)))).--------..))))))))))))))))))))).......................... ( -24.00, z-score = -0.34, R) >droSec1.super_0 2144907 101 - 21120651 UUUAUCCUGCGGGUUAACUCGAUUUCCGGUUGGAUGCGCUUUUGUUUGUGUC--------GGUGACCGGAAAUUAGUUUCGUAUAUUCAUUGCCUCUUGUUCACGCCAU .......(((((...((((.((((((((((((...((((........)))).--------..))))))))))))))))))))).......................... ( -24.00, z-score = -0.34, R) >droYak2.chr3L 9889384 101 - 24197627 UUUAUCCUGCGGGUUAACUCGAUUUCCGGUUGGAUGCGCUUUUGUUUGUGUC--------GGUGACCGGAAAUUAGUUUCGUAUAUUCAUUGCCUCUUGUUCACGCCAU .......(((((...((((.((((((((((((...((((........)))).--------..))))))))))))))))))))).......................... ( -24.00, z-score = -0.34, R) >droEre2.scaffold_4784 9904138 101 - 25762168 UUUAUCCUGCGGGCUAACUCGAUUUCCGGUUGGAUGCGCUUUUGUUUGUGUC--------GGUGACCGGAAAUUAGUUUCGUAUAUUCAUUGCCUCUUGUUCACGCCAU ...........(((.((((.((((((((((((...((((........)))).--------..))))))))))))))))..(((.......)))...........))).. ( -25.50, z-score = -0.68, R) >dp4.chrXR_group6 5581653 102 + 13314419 UUUAUCUUACGUUUUAACUCGAUUUCCGGCUUGAUGCGCUUUUAUUUGUGUCGAUUGUCGGAUGGCCGGAAAUUAGUUUCGUUUAUUCUUUGCUAUGCCAUA------- ........(((....((((.(((((((((((((((((((........)))).....))))...))))))))))))))).)))....................------- ( -24.10, z-score = -1.73, R) >droPer1.super_27 723860 102 - 1201981 UUUAUCUUACGUUUUAACUCGAUUUCCGGCUUGAUGCGCUUUUAUUUGUGUCGAUUGUCGGAUGGCCGGAAAUUAGUUUCGUUUAUUCUUUGCUAUGCCAUA------- ........(((....((((.(((((((((((((((((((........)))).....))))...))))))))))))))).)))....................------- ( -24.10, z-score = -1.73, R) >droGri2.scaffold_15110 4816455 81 - 24565398 ------------UUUAAUUCGAUUUCCGGUUUGAUGCGCUUUUGUUUGUGCC--------ACACACCGGAAAUUAAUUUCGUUUAUGCUGCGCUUCGUUUU-------- ------------........((((((((((.((..((((........)))).--------.)).)))))))))).....(((.......))).........-------- ( -20.70, z-score = -2.27, R) >consensus UUUAUCCUGCGGGUUAACUCGAUUUCCGGUUGGAUGCGCUUUUGUUUGUGUC________GGUGACCGGAAAUUAGUUUCGUAUAUUCAUUGCCUCUUGUUCACGCCAU ........(((....((((.(((((((((((....((((........))))............))))))))))))))).)))........................... (-18.76 = -18.40 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:41 2011