| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,911,057 – 9,911,162 |
| Length | 105 |
| Max. P | 0.538918 |
| Location | 9,911,057 – 9,911,162 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 92.46 |
| Shannon entropy | 0.12850 |
| G+C content | 0.43483 |
| Mean single sequence MFE | -26.02 |
| Consensus MFE | -19.58 |
| Energy contribution | -20.02 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9911057 105 + 24543557 GCAAGGAAGUGAGCGAGUGAGUUUGCUGCCACAACAAUAAGCAGCAAUAGAACAGCUACCAAGAAGAAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGC (((..(((((((((((((....(((((((...........)))))))....))..((....)).....)))))))))))..(((.....)))..........))) ( -24.10, z-score = -1.48, R) >droSim1.chr3L 9296765 98 + 22553184 GCAAGGAAGUGAGCG----AGUUUGCUGCCAC---AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGC (((..((((((((((----(..(((((((...---.....))))))).......(((.......))).)))))))))))..(((.....)))..........))) ( -26.90, z-score = -2.70, R) >droSec1.super_0 2143191 98 + 21120651 GCAAGGAAGUGAGCG----AGUUUGCUGCCAC---AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGC (((..((((((((((----(..(((((((...---.....))))))).......(((.......))).)))))))))))..(((.....)))..........))) ( -26.90, z-score = -2.70, R) >droYak2.chr3L 9887660 98 + 24197627 GCAAGGAAGUGAGCG----AGUUUGCUGCCAC---AAUAAGCAGCCAUAGAACAGCUACCAAAGGGCAUCGUUUACUUUGAAUCGCACAGAUAAAGUUACACUGC (((..((((((((((----((((((((((...---.....)))))....)))).(((.......))).)))))))))))..(((.....)))..........))) ( -25.90, z-score = -1.44, R) >droEre2.scaffold_4784 9902543 98 + 25762168 GCAAGGAAGUGAGCG----AGUUGGCAGCUGC---AAUAAGCAGCAAUAGAACAGCUACCAAAAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAGAUACACUGC (((..((((((((((----(....((.(((((---.....)))))..(((.....))).......)).)))))))))))..(((.....)))..........))) ( -26.30, z-score = -1.98, R) >consensus GCAAGGAAGUGAGCG____AGUUUGCUGCCAC___AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGC (((..((((((((((.....(((((((((...........)))))....)))).(((.......)))..))))))))))..(((.....)))..........))) (-19.58 = -20.02 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:40 2011