| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,904,849 – 9,904,942 |
| Length | 93 |
| Max. P | 0.808528 |
| Location | 9,904,849 – 9,904,942 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 85.63 |
| Shannon entropy | 0.29425 |
| G+C content | 0.36878 |
| Mean single sequence MFE | -21.01 |
| Consensus MFE | -15.30 |
| Energy contribution | -15.19 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9904849 93 + 24543557 GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCUAACAGUAACAAUAAUAAUCAUAACAGCAACAGAAACAACGGCCAUGGCGGCAAAAUC ((((((..........((((((..(((((((......))))))))))))).......)))))).............(((.....)))...... ( -20.73, z-score = -1.68, R) >droSim1.chr3L 9290605 93 + 22553184 GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCUAACAGUAACAAUAAUAAUCAUAACAGCAACAGAAACAACGGCCAUGGCGGCAAAAUC ((((((..........((((((..(((((((......))))))))))))).......)))))).............(((.....)))...... ( -20.73, z-score = -1.68, R) >droSec1.super_0 2137006 93 + 21120651 GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCUAACAGUAACAAUAAUAAUCAUAACAGCAACAGAAACAACGGCCAAGGCGGCAAAAUC ((((((..........((((((..(((((((......))))))))))))).......)))))).............(((.....)))...... ( -20.73, z-score = -1.91, R) >droYak2.chr3L 9881404 93 + 24197627 GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCUAACAGUAACAAUAAUAAUCACAACAGCAACAGAAACAACGGCCAUGGCGGCUAAAUC ((((((..........((((((..(((((((......))))))))))))).......))))))............((((.....))))..... ( -20.93, z-score = -1.71, R) >droEre2.scaffold_4784 9896421 93 + 25762168 GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCUAACAGUAACAAUAAUAAUCAUAACAGCAACAGAAACAACGGCCAUGGCGGCAAAAUC ((((((..........((((((..(((((((......))))))))))))).......)))))).............(((.....)))...... ( -20.73, z-score = -1.68, R) >droAna3.scaffold_13337 14835251 93 + 23293914 GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCUAACAGUAACAAUAAUAAUCAUAACAGUAACAAAAACAACGGCGAUGGCGGCAAAAUC ((((((.(((......((((((..(((((((......)))))))))))))...........((.......))......)))))))))...... ( -17.30, z-score = -0.86, R) >droVir3.scaffold_13049 9033951 90 + 25233164 GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCCAACAGCAACAACAGAGGCAACAA-G--AAAAACAACAACGAUUGCGCCAGGCAAAUC (.(((((.((.....(((((((..(((((((......))))))))))))))(....)..-)--).))))).).....((((.....))))... ( -22.90, z-score = -1.74, R) >droGri2.scaffold_15110 4808634 87 + 24565398 GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCCAACAGCAGUAGCAAAAACAACAGCA--AAAAACAAAAACAGUAGCA----GCAAAUC ((((((........(((((((..((((((((((((.....))))...........))))))--)).))))))).....))))----))..... ( -24.02, z-score = -3.13, R) >consensus GCUGUUUAUCAUAAUUUUGUUGAUUUGCUGUCUGCUAACAGUAACAAUAAUAAUCAUAACAGCAACAGAAACAACGGCCAUGGCGGCAAAAUC ((((((..........((((((..(((((((......))))))))))))).......)))))).............(((.....)))...... (-15.30 = -15.19 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:39 2011