| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,897,453 – 9,897,525 |
| Length | 72 |
| Max. P | 0.756251 |
| Location | 9,897,453 – 9,897,525 |
|---|---|
| Length | 72 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 74.38 |
| Shannon entropy | 0.49018 |
| G+C content | 0.38744 |
| Mean single sequence MFE | -13.77 |
| Consensus MFE | -6.86 |
| Energy contribution | -7.39 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.756251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9897453 72 - 24543557 -UCUACACUCAGUUAUGCUUGAAGUC--UUUAAGCCAUU-CCGUUUAAUGACUUCGAUAAUUUGGCCAAAAGACCU -......((.(((((...((((((((--.((((((....-..)))))).))))))))))))).))........... ( -14.60, z-score = -2.20, R) >droAna3.scaffold_13337 14827196 76 - 23293914 UACACUCGCUGGUUAUGCCGGAAUAAGCUUUAAGCCAUCUCUGUUUAACGACUGCGAAAAUUGGGCUAAAAGUGCU ........((((.....)))).....(((((.((((.((.(.(((....))).).))......)))).)))))... ( -14.40, z-score = 0.49, R) >droEre2.scaffold_4784 9889081 66 - 25762168 ------GAUCAGUUAUGCCUGAAGUC--UUUAAGCCAUU--CGUUUAAUGACUUCGAUAAUUUGGCCAACAGACCU ------.....(((..((((((((((--.((((((....--.)))))).))))))).......))).)))...... ( -15.41, z-score = -2.58, R) >droYak2.chr3L 9873873 71 - 24197627 -UAUACACUCAGUUAUGCCUGAAGUC--UUUAAGCCAUU--CGUUUAAUGACUUUGAUAAUUUGGCCAACAGACUU -.......((((......))))((((--(....((((..--...((((.....)))).....))))....))))). ( -13.30, z-score = -1.68, R) >droSec1.super_0 2129798 56 - 21120651 -----------------UCUGAACUC-AGUUAAGCCAUU--CGUUUAAUGACUUCGAUAAUUUGACCAACAGACCU -----------------((((.....-.(((((((....--.)))))))....((((....))))....))))... ( -7.80, z-score = -1.14, R) >droSim1.chr3L 9283257 71 - 22553184 -UCUGCACUCAGUUAUGCUUGAAGUC--UUUAAGCCAUU--CGUUUAAUGACUUCGAUAAUUUGGCCAACAGACCU -((((..((.(((((...((((((((--.((((((....--.)))))).))))))))))))).))....))))... ( -17.10, z-score = -2.51, R) >consensus _UCU_CACUCAGUUAUGCCUGAAGUC__UUUAAGCCAUU__CGUUUAAUGACUUCGAUAAUUUGGCCAACAGACCU ................((((((((((...((((((.......)))))).))))))).......))).......... ( -6.86 = -7.39 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:37 2011