| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,890,346 – 9,890,448 |
| Length | 102 |
| Max. P | 0.680905 |
| Location | 9,890,346 – 9,890,448 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 72.45 |
| Shannon entropy | 0.50653 |
| G+C content | 0.53953 |
| Mean single sequence MFE | -29.34 |
| Consensus MFE | -12.87 |
| Energy contribution | -13.77 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9890346 102 + 24543557 GCUCAUCGCAGAC---------CCUCAUUUUCGCCCUGUAUUGCGAUAAGGCAGCGAAUGACAUGAUGACUCAUGGACUCAUUGACUGCCCCCGCUUAACCACCACUAUAG-- ((..(((((((((---------...............)).)))))))..(((((..((((((((((....)))))...)))))..)))))...))................-- ( -23.46, z-score = -1.85, R) >dp4.chrXR_group6 5558852 102 - 13314419 -------GCAGGG-CUGUGUCUCUUCUGUUUUGCUGUGCUCAGCGAUAAGGCGGCGCAAGUGACGAUGAGUCAUAAAU---UUGGCUUCUGCCUGGAGUGCGCCCCCCGAAGC -------...(((-..((((((((......((((((....))))))..((((((.((..(((((.....)))))....---...))..)))))))))).))))..)))..... ( -33.90, z-score = 0.15, R) >droPer1.super_27 699699 102 + 1201981 -------GCAGGG-CUGUGUCUCUUCUGUCUUGCUGUGCUCAGCGAUAAGGCAGCGCAAGUGACGAUGAGUCAUAAAU---UUGGCUUCUGCCUGGAGUGCGCCCCCCGAAGC -------...(((-..((((((((......((((((....))))))..((((((.((..(((((.....)))))....---...))..)))))))))).))))..)))..... ( -34.50, z-score = -0.06, R) >droEre2.scaffold_4784 9881817 108 + 25762168 GCUCAUCGCAGACCCUCAAUGCCUUCAUUUUCGCCCUCCACUGCGAUAAGGCAGCGAAUCACAUGAUGACUCAUGGAC---UUGGCUGCCCCCGCUUAACCACCACUUUAC-- ((..(((((((.............................)))))))..((((((.((((.(((((....))))))).---)).))))))...))................-- ( -27.75, z-score = -3.06, R) >droYak2.chr3L 9866582 108 + 24197627 GCUCAUCGCAGACCCUCAAUGCCUUCAUUUUCACCCUGCACAGCGAUAAGGCAGCGAAUCACAUGAUGACUCAUGGAC---UUGGCUGCCCCCGCUUAACCACCACUUUAC-- .......((((......((((....))))......))))..((((....((((((.((((.(((((....))))))).---)).))))))..))))...............-- ( -27.80, z-score = -2.92, R) >droSec1.super_0 2122694 108 + 21120651 GCUCAUCGCAGACCCUCAAUGCCUUCAUUUUCGCCCUGUACUGCGAUAAGGCAGCGAAUGACAUGAUGACUCAUGGAC---UUGGCUGCCCCCGCUUAACCACCACAGUAC-- ((..(((((((.....((..((..........))..))..)))))))..((((((.((...(((((....)))))...---)).))))))...))................-- ( -28.50, z-score = -1.87, R) >droSim1.chr3L 9274204 108 + 22553184 GCUCAUCGCAGACACUCAAUGCCUUCAUUUUCGCCCUGUACUGCGAUAAGGCAGCGAAUGACAUGAUGACUCAUGGAC---UUGGCUGCCCCCGCUUAACCACCACUGUAC-- ((..((((((((((...((((....)))).......))).)))))))..((((((.((...(((((....)))))...---)).))))))...))................-- ( -29.50, z-score = -2.29, R) >consensus GCUCAUCGCAGAC_CUCAAUGCCUUCAUUUUCGCCCUGCACUGCGAUAAGGCAGCGAAUGACAUGAUGACUCAUGGAC___UUGGCUGCCCCCGCUUAACCACCACUCUAC__ ..............................((((........))))...((((((.((...(((((....)))))......)).))))))....................... (-12.87 = -13.77 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:35 2011