| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,882,337 – 9,882,437 |
| Length | 100 |
| Max. P | 0.993551 |
| Location | 9,882,337 – 9,882,437 |
|---|---|
| Length | 100 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.66 |
| Shannon entropy | 0.54725 |
| G+C content | 0.38982 |
| Mean single sequence MFE | -22.65 |
| Consensus MFE | -13.89 |
| Energy contribution | -14.03 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.993551 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9882337 100 + 24543557 ------------------AAACCAGUGCGUGGACGAGGAA-AACCACAGCGAAAAACC-AGUAAAAAUGUACGGCAUUGAUAAUUACCCCAAGAAUUAUCAUGCCAGUGGCAUUGGCCUU ------------------...(((((((((((........-..)))).((........-.(((......)))(((((.(((((((........)))))))))))).)).))))))).... ( -28.60, z-score = -2.80, R) >droSim1.chr3L 9266185 100 + 22553184 ------------------AAACCAGUGCGUGGACGAGGAA-AACCACAGUGAAAAGCC-AGUAAAAAUGUACGGCAUUGAUAAUUACCCCAAGAAUUAUCAUGCCAGUGGCAUUGGCCUU ------------------...(((((((((((........-..))))...........-..........((((((((.(((((((........)))))))))))).)))))))))).... ( -28.30, z-score = -2.44, R) >droSec1.super_0 2114685 100 + 21120651 ------------------AAACCAGUGCGUGGACGAGGAA-AACCACAACGAAAAACC-AGUAAAAAUGUACGGCAUUGAUAAUUACCCCAAGAAUUAUCAUGCCAGUGGCAUUGGCCUU ------------------...(((((((((((........-..)))).((........-.(((......)))(((((.(((((((........)))))))))))).)).))))))).... ( -28.30, z-score = -2.97, R) >droYak2.chr3L 9858597 100 + 24197627 ------------------AAACCAGUGCGUGGAAUAGGAA-AACCACAUCGAAAACCC-AGUGAAAAUGUACGGCAUUGAUAAUUACCCCAAGAAUUAUCAUGCCAGUGGCAUUGGCCUU ------------------...(((((((((((........-..))))...........-..........((((((((.(((((((........)))))))))))).)))))))))).... ( -28.30, z-score = -2.64, R) >droEre2.scaffold_4784 9873816 100 + 25762168 ------------------AAACCAGUGCGUGGAACAGGAA-AAGCACAUCGAAAAACC-AGUGAAAAUGUACGGCAUUGAUAAUUACCCCAAGAAUUAUCAUGCCAGUGGCAUUGGCCUU ------------------...((((((((.....).....-...(((...........-.(((......)))(((((.(((((((........)))))))))))).)))))))))).... ( -25.20, z-score = -1.48, R) >droAna3.scaffold_13337 14812435 91 + 23293914 -----------------------------UAACCCAAGAAGAAUCCCAACUGAAAGCCGAGUUAAAAUGUACGGCAUUGAUAAUUACCCCAAAAAUUAUCAUGCCAGUGGCAUUGGCCUU -----------------------------....((((......((......))..((((.((........))(((((.(((((((........))))))))))))..)))).)))).... ( -19.40, z-score = -2.05, R) >dp4.chrXR_group6 5551358 82 - 13314419 -------------------------------------AAACCAGAGAAUUCAUUGAAA-AUAAAUAAUGUACGGUAUUGAUAAUUACCCCAAGAAUUAUCAUGCCAGUGGCAUUGGACUU -------------------------------------.....................-.....(((((((((((((.(((((((........)))))))))))).)).))))))..... ( -15.10, z-score = -1.25, R) >droPer1.super_27 692216 82 + 1201981 -------------------------------------AAACCAGAGAAUCCAUUGAAA-AUAAAUAAUGUACGGUAUUGAUAAUUACCCCAAGAAUUAUCAUGCCAGUGGCAUUGGACUU -------------------------------------.....................-.....(((((((((((((.(((((((........)))))))))))).)).))))))..... ( -15.10, z-score = -1.25, R) >droWil1.scaffold_180698 4988223 89 - 11422946 -----------------------------AGAGCUAAAAAAAAACACAAUCGAACAUU--GUGAAAAUGUAUGGCAUUGAUAAUUACCCCAAAAAUUAUCAUGCGAGUGGCAUUGGGCUA -----------------------------..((((.........((((((.....)))--)))..(((((.(.((((.(((((((........))))))))))).)...))))).)))). ( -22.40, z-score = -2.76, R) >droGri2.scaffold_15110 4784478 119 + 24565398 AAUAGUUGAUUAGUUUAAGAAGUGGACAAAAAAAAAAAAACAAACAAAGACAACCAAA-AAAAAAUAUGUACGGCAUCGAUAAUUAUCCAAAAAAUUAUCAUGCGAGCGGCAUUGGCCUU ....(((.....(((((.....)))))...............................-..............((((.(((((((........))))))))))).)))(((....))).. ( -15.80, z-score = -0.36, R) >consensus __________________AAACCAGUGCGUGGACGAGGAA_AACCACAUCGAAAAACC_AGUAAAAAUGUACGGCAUUGAUAAUUACCCCAAGAAUUAUCAUGCCAGUGGCAUUGGCCUU .................................................................(((((..(((((.(((((((........))))))))))))....)))))...... (-13.89 = -14.03 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:34 2011