| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,868,495 – 9,868,655 |
| Length | 160 |
| Max. P | 0.939828 |
| Location | 9,868,495 – 9,868,586 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 82.42 |
| Shannon entropy | 0.29089 |
| G+C content | 0.29737 |
| Mean single sequence MFE | -10.69 |
| Consensus MFE | -7.00 |
| Energy contribution | -8.25 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9868495 91 + 24543557 UUAUUUUUCUGCACUUAAUCUCAUCGAAAUGCACUCAAUUUUUAAAUGUUCCUCGUUAUAAUAACACAUUUGAUUUUAUUGCACUUAAACG .............................((((........((((((((.....((((...))))))))))))......))))........ ( -6.54, z-score = -0.20, R) >droEre2.scaffold_4784 9858747 87 + 25762168 CUGUUCUUCUGCACUCAAUCCCAUUAAAGUCUAUUUAAUUCUUAUUUAUAGCUCGUUACCAUAACACAUAAGAUUUUAUUGCACUUC---- .........((((...((((.......((.((((..(((....))).)))))).((((...))))......))))....))))....---- ( -5.20, z-score = 0.20, R) >droSec1.super_0 2100880 91 + 21120651 UUCUUUUUCUGCACUUAAUCCCAUCAAAGUGCAAUAAACUUUUAAAUGUUCUUCGUUAUCAUAACACAUUCGAUUUUAUUGCACUUAAACG ..........................((((((((((((...(..(((((.....((((...)))))))))..).))))))))))))..... ( -15.50, z-score = -4.75, R) >droSim1.chr3L 9252205 91 + 22553184 UUCUUUUUCUGCACUUAAUCCCAUCAAAGUGCAAUAAACUUUUAAAUGUUCCUCGUUAUCAUAACACAUUCGAUUUUAUUGCACUUAAACG ..........................((((((((((((...(..(((((.....((((...)))))))))..).))))))))))))..... ( -15.50, z-score = -5.02, R) >consensus UUCUUUUUCUGCACUUAAUCCCAUCAAAGUGCAAUAAACUUUUAAAUGUUCCUCGUUAUCAUAACACAUUCGAUUUUAUUGCACUUAAACG ..........................((((((((((((.((...(((((.....((((...))))))))).)).))))))))))))..... ( -7.00 = -8.25 + 1.25)
| Location | 9,868,553 – 9,868,655 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 91.33 |
| Shannon entropy | 0.11704 |
| G+C content | 0.31679 |
| Mean single sequence MFE | -13.07 |
| Consensus MFE | -12.10 |
| Energy contribution | -11.77 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9868553 102 + 24543557 UAAUAACACAUUUGAUUUUAUUGCACUUAAACGUCAUAAAAUCCAUCGUCUUUUUACUUCCUUUACGUCAGGAAUCAUAAACUGUAGUUUACAAACUCUUAG .............((((((((.((........)).))))))))..............(((((.......)))))...(((((....)))))........... ( -10.90, z-score = -0.86, R) >droSec1.super_0 2100938 96 + 21120651 UCAUAACACAUUCGAUUUUAUUGCACUUAAACGUCAUAAAAUCCAU------UUUACUUUCUUUACGUCAGGAAUCAUGAAGUGUAGUUUACAACCUCUGAG .....((((.(((((((((((.((........)).))))))))...------......(((((......)))))....)))))))................. ( -13.10, z-score = -0.78, R) >droSim1.chr3L 9252263 96 + 22553184 UCAUAACACAUUCGAUUUUAUUGCACUUAAACGUCAUAAAAUCCAU------UUUACUUCCUUUACGUCAGGAAUCAUGAAGUGUAGUUUACAACCUCUGAG .....((((.(((((((((((.((........)).))))))))...------.....(((((.......)))))....)))))))................. ( -15.20, z-score = -1.67, R) >consensus UCAUAACACAUUCGAUUUUAUUGCACUUAAACGUCAUAAAAUCCAU______UUUACUUCCUUUACGUCAGGAAUCAUGAAGUGUAGUUUACAACCUCUGAG .....((((.(((((((((((.((........)).))))))))..............(((((.......)))))....)))))))................. (-12.10 = -11.77 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:31 2011