| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,866,381 – 9,866,446 |
| Length | 65 |
| Max. P | 0.845285 |
| Location | 9,866,381 – 9,866,446 |
|---|---|
| Length | 65 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 50.43 |
| Shannon entropy | 0.88112 |
| G+C content | 0.36749 |
| Mean single sequence MFE | -11.32 |
| Consensus MFE | -4.40 |
| Energy contribution | -4.54 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.86 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9866381 65 + 24543557 -----------GAAUUUUCCGAACCACAGAUAGUUCCUUGAAAUGUGUGAACAUUUCGCACACCGUUUCAUUUUUU------------------- -----------(((((.((.(.....).)).)))))..((((((((((((.....)))))))...)))))......------------------- ( -11.90, z-score = -1.89, R) >droAna3.scaffold_13337 14796491 85 + 23293914 ----------AUUCUUUUUGUAGCCUCGGCCAGCAAACCUUUGUGCCGAAAGUUCUCUCGACUAUUAUUUCUGUUUAAGCAUAAGUUAGUUCCUU ----------...............(((((..((((....)))))))))..........(((((..((((.(((....))).))))))))).... ( -12.60, z-score = -0.20, R) >droEre2.scaffold_4784 9856243 69 + 25762168 GAAUUUUCCAAGAUUUUUCCGAACCACCGAUAGUUCCUUGAAAUGUGUGAACAUUUCGCACAGCGUUUU-------------------------- ............(((((...((((........))))...)))))((((((.....))))))........-------------------------- ( -10.70, z-score = -0.78, R) >droYak2.chr3L 9842434 75 + 24197627 GAAUUUUCCAUGAUUUUUCCGAACCACUGAUAGUUCCUUGAAAUGUGUGAACUUUUCACACACGGUUUUUUUCAA-------------------- (((....((...(((((...((((........))))...)))))((((((.....))))))..)).....)))..-------------------- ( -14.60, z-score = -1.66, R) >droSec1.super_0 2098823 76 + 21120651 GAAUUUUCCAGAAUUUUUCCGAACCACCGAUAGUUCCUUCAAAUGUGUGAACAUUUCGCACACCGUUUCUUUUUCU------------------- .........((((.......((((........)))).......(((((((.....)))))))....))))......------------------- ( -10.70, z-score = -1.27, R) >droSim1.chr3L 9250157 75 + 22553184 GAAUUUUCCAAGAUUUUUCCGAACCACCGAUAGUUCCUUCAAAUGUGUGAACAUUUCGCACACCGUUGAUUUUUC-------------------- ....................((((........))))..((((.(((((((.....)))))))...))))......-------------------- ( -12.10, z-score = -1.27, R) >droMoj3.scaffold_6680 18415648 61 - 24764193 --------------UUAUUGCAAUGCCUAAUGCCCAACUGUAAUGUGUGAACAUUUCACACGACUCUUUGGCAGC-------------------- --------------................((((.((..((...((((((.....)))))).))..)).))))..-------------------- ( -13.90, z-score = -1.44, R) >triCas2.ChLG9 1655562 60 - 15222296 -------GAAUUUUCUUUCAAAAAUGCCAAAAGAUCGUUGAAUGGAUUAAAAGUUUCUUCUUUUUUU---------------------------- -------.....(((.(((((..((........))..))))).)))..(((((......)))))...---------------------------- ( -4.10, z-score = 1.77, R) >consensus _______CCAAGAUUUUUCCGAACCACCGAUAGUUCCUUGAAAUGUGUGAACAUUUCGCACACCGUUUUUUUUUC____________________ ...........................................(((((((.....)))))))................................. ( -4.40 = -4.54 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:29 2011