| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,838,792 – 9,838,888 |
| Length | 96 |
| Max. P | 0.863564 |
| Location | 9,838,792 – 9,838,888 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 77.74 |
| Shannon entropy | 0.29824 |
| G+C content | 0.31283 |
| Mean single sequence MFE | -17.29 |
| Consensus MFE | -13.05 |
| Energy contribution | -12.83 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.863564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9838792 96 - 24543557 AAAUUCUCGUAAUGAGGCUAUUGGCUUUCAAUUUUUAAAGCCUUCUUUCGCCAUUAAUAGAUGGCUACUUCUUCUACUGUUUUUGGUUAGAAACUU ........(((..((((.....((((((........)))))).......((((((....))))))..))))...))).(((((......))))).. ( -19.60, z-score = -1.70, R) >droSim1.chr3L 9222237 82 - 22553184 AAAUUCUCGUAAUGAGGCUAUUGGCUUUCAAUUUUUAAAGUCUUCAUUAGCCAUUAAUAGAUGGC----UUCUAUAAUACUUUAAA---------- ............((((((.....)).))))...((((((((.......(((((((....))))))----)........))))))))---------- ( -16.56, z-score = -2.20, R) >droSec1.super_0 2071278 77 - 21120651 AAAUUCUCGUAAUGAGGCUAUUGGCUUUCAAUUUUUAAAGUCUUCAUUAGCCAUUAAUAGAUGGC----UCCUAGAA-ACUU-------------- ...((((.(((((((((((((((.....))))......)).))))))))((((((....))))))----..).))))-....-------------- ( -15.70, z-score = -1.45, R) >consensus AAAUUCUCGUAAUGAGGCUAUUGGCUUUCAAUUUUUAAAGUCUUCAUUAGCCAUUAAUAGAUGGC____UCCUAUAAUACUUU_____________ ....((((.....)))).....((((((........)))))).......((((((....))))))............................... (-13.05 = -12.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:27 2011