| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,834,238 – 9,834,331 |
| Length | 93 |
| Max. P | 0.723285 |
| Location | 9,834,238 – 9,834,331 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 70.92 |
| Shannon entropy | 0.54639 |
| G+C content | 0.60183 |
| Mean single sequence MFE | -41.81 |
| Consensus MFE | -20.34 |
| Energy contribution | -18.94 |
| Covariance contribution | -1.40 |
| Combinations/Pair | 1.63 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723285 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9834238 93 + 24543557 UCAGCGAAGGCCUGUGGUGAAUGCUUCUGCAGAUCGGUGGCCAGCGGCACCAGAGGAUUGUGCUGUUGGUGUUGCGUCUGCGACAGAGACUGG------------------------ ...((....))(((..(.........)..)))..((((.(((((((((((.........)))))))))))(((((....)))))....)))).------------------------ ( -33.80, z-score = -0.16, R) >droMoj3.scaffold_6680 4592338 117 - 24764193 UCGACAAAUGCCUGCGGCGACUGUUGCUGCAGAGCGCUGGCCAGCGGGACCAGCGGAUUGUUCUGCUGCUGCUGUUGCUGCUGGCUGUGCUGUGGCAGGGGCAUGGACAGGUGCUGG ..........(((((.((..((((....))))(((((.(((((((((.(.((((((...(.....)..)))))).).)))))))))))))))).)))))(((((......))))).. ( -55.60, z-score = -1.13, R) >droVir3.scaffold_13049 16555962 114 + 25233164 UCGACAAAUGCCUGCGGCGACUGCUGCUGCAGGGCGCUGGCCAGCGGCACAAGCGGAUUGUUUGGCUGCUGUUGUUGUUGCUGA---UGCUGUGGCAGGGGCAGGGGCAGGUGCUGA ..........(((((((((.....)))))))))(((((...(((((((.(((((.....)))))))))))).((((.(((((..---(((....)))..))))).)))))))))... ( -53.60, z-score = -1.06, R) >droWil1.scaffold_180916 240626 102 - 2700594 UCGGCAAAUGCUUGCGGGGAUUGUUGUUGCAGGGAUGUAGCCAGAGGAGCCAGCGGAUUGUUUUGCUGAUGUUGCUGCUGCUGCAAUUGAGGCAUAUGCUGA--------------- ((((((.((((((.(...((((((.((.((((.(((((.(((....).))(((((((....)))))))))))).)))).)).))))))))))))).))))))--------------- ( -37.40, z-score = -1.12, R) >droPer1.super_67 175300 93 - 321716 UCGGCAAAGGCUUGUGGCGACUGCUGCUGCAGGGUGGUGGCCAGCGGCACCAGAGGAUUGUGCUGCGGGAGCUGCUGUUGCGGCAGGUGCUGG------------------------ .((((....((((((.((((((((....))))((..((..((.(((((((.........))))))).)).))..)).)))).)))))))))).------------------------ ( -42.80, z-score = -0.53, R) >dp4.chrXR_group5 587194 93 + 740492 UCGGCAAAGGCUUGUGGCGACUGCUGCUGCAGGGUGGUGGCCAGCGGCACCAGAGGAUUGUGCUGCGGGAGCUGCUGUUGCGGCAGGUGCUGG------------------------ .((((....((((((.((((((((....))))((..((..((.(((((((.........))))))).)).))..)).)))).)))))))))).------------------------ ( -42.80, z-score = -0.53, R) >droAna3.scaffold_13337 3520651 93 + 23293914 UCGGCGAAGGCCUGCGGCGAGUGCUUCUGCAGCUCUGUGGCCAGUGGCACGAGGGGAUUGUGUUGCUGGUGCUGGGGCUGCUGGAGGUGUUGG------------------------ ..(((....))).....(.((..((((((((((((((..(((((..((((((.....))))))..)))))..))))))))).)))))..)).)------------------------ ( -49.70, z-score = -4.02, R) >droEre2.scaffold_4784 9823614 93 + 25762168 UCAGCGAAGGCCUGUGGUGAAUGCUUCUGCAGAUCGGUGGCCAGCGGCACUAGAGGAUUGUGCUGCUGGUGUUGCGUCUGCGACAGAUGUUGG------------------------ .(((((..(..(((..(.........)..)))..)....(((((((((((.........)))))))))))(((((....)))))...))))).------------------------ ( -37.10, z-score = -1.30, R) >droYak2.chr3L 9809233 93 + 24197627 UCAGCGAAGGCCUGUGGUGAAUGCUUCUGCAGAUCGGUGGCCAGCGGCACUAGGGGAUUGUGCUGCUGGUGUUGCGUCUGCGACAAAUGCUGG------------------------ .(((((..(..(((..(.........)..)))..)....(((((((((((.........)))))))))))(((((....)))))...))))).------------------------ ( -39.50, z-score = -1.87, R) >droSec1.super_0 2066747 93 + 21120651 UCAGCGAAGGCCUGUGGUGAAUGUUUUUGCAGAUCGUUGGCCAGCGGCACCAGAGGAUUGUGCUGUUGGUGUUGCGUUUGCGACAGAUUCUGG------------------------ ...(((((((((..((((...(((....))).))))..)))).((((((((((.((......)).)))))))))).)))))..(((...))).------------------------ ( -33.80, z-score = -1.41, R) >droSim1.chr3L 9217715 93 + 22553184 UCAGCGAAGGCCUGUGGUGAAUGUUUUUGCAGAUCGUUGGCCAGCGGCACCAGAGGAUUGUGCUGUUGGUGUUGCGUUUGCGACAGAUUCUGG------------------------ ...(((((((((..((((...(((....))).))))..)))).((((((((((.((......)).)))))))))).)))))..(((...))).------------------------ ( -33.80, z-score = -1.41, R) >consensus UCGGCGAAGGCCUGUGGCGAAUGCUUCUGCAGAUCGGUGGCCAGCGGCACCAGAGGAUUGUGCUGCUGGUGUUGCGGCUGCGGCAGAUGCUGG________________________ .((((......((((((.........)))))).........(((((((((.........)))))))))..))))........................................... (-20.34 = -18.94 + -1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:26 2011