| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,806,583 – 9,806,686 |
| Length | 103 |
| Max. P | 0.723750 |
| Location | 9,806,583 – 9,806,686 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 93.20 |
| Shannon entropy | 0.11722 |
| G+C content | 0.45806 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -27.90 |
| Energy contribution | -27.94 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9806583 103 + 24543557 GCUUGAAGUGCUCUUUUCCUUAUUUUCCUGUUGGCUUCAGCAAGUGGAAUAGGGGGCAUUUGUGAUUAGCCCAAUGUCCGUGGCUAAUUUAUAAUCGGGUGUG ((((((.(((((.....((((((((..((((((....)))).))..)))))))))))))(((((((((((((.......).)))))).))))))))))))... ( -31.50, z-score = -1.72, R) >droSim1.chr3L 9189522 103 + 22553184 GCUUGAAGUGCUCUUUUCCUUAUUUUCCUGUUGGCUUCGGCGGGUGGAAUAGGGGGCAUAUGUGAUUAGCCCAAUGUCCGUGGCUAAUUUAUAAUCGGGUGUG ((((((.(((((.....((((((((((((((((....))))))).)))))))))))))).((((((((((((.......).)))))).))))).))))))... ( -34.40, z-score = -2.00, R) >droSec1.super_0 2039696 103 + 21120651 GCUUGAAGUGCUCUUUUCCUUAUUUUCCUGUUGCCUUCGGCGAGUGGAACAGGGGGCAUAUGUGAUUAGCCCAAUGUCCGUGGCUAAUUUAUAAUCAGGUGUG ((((((.((((((....(((....((((..(((((...)))))..)))).))))))))).((((((((((((.......).)))))).))))).))))))... ( -31.50, z-score = -1.53, R) >droYak2.chr3L 9780663 102 + 24197627 GCUUGAAGUGCUCUUUUCCUUAUUUUCUUGUUGGCUUCAGCGAGUGGAACAGGGGA-AUAUGUGAUUAGCCCCAUGUCCGUGGCUAAUUUAUAAUCGGGUGUG ((((((...((...(((((((.(((((((((((....))))))).)))).))))))-)...))((((((((.(......).)))))))).....))))))... ( -29.50, z-score = -1.34, R) >droEre2.scaffold_4784 9795410 102 + 25762168 GCUUGAAGUGCUCUAUUCCUAAUUUUCUUGUUGGCUUCAGCGAGUGGAACUGGGGA-AUAUGUGAUUAGCCCAAUGCCCGUGGCUAAUUUAUAAUCGGGUGUG ((((((.......(((((((..((..(((((((....)))))))..))....))))-)))((((((((((((.......).)))))).))))).))))))... ( -28.60, z-score = -1.07, R) >consensus GCUUGAAGUGCUCUUUUCCUUAUUUUCCUGUUGGCUUCAGCGAGUGGAACAGGGGGCAUAUGUGAUUAGCCCAAUGUCCGUGGCUAAUUUAUAAUCGGGUGUG ((((((.((.((((.((((.......(((((((....))))))).)))).)))).))...((((((((((((.......).)))))).))))).))))))... (-27.90 = -27.94 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:24 2011