| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,788,774 – 9,788,884 |
| Length | 110 |
| Max. P | 0.604957 |
| Location | 9,788,774 – 9,788,884 |
|---|---|
| Length | 110 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 66.49 |
| Shannon entropy | 0.68081 |
| G+C content | 0.29541 |
| Mean single sequence MFE | -17.77 |
| Consensus MFE | -5.85 |
| Energy contribution | -5.57 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9788774 110 - 24543557 -CGCCAAUUUGUCUGUACUUUAUUACCCACAAAAGCCAUAAAGCUUAU--AUUGUAUUUAGUUGUUAUUGUUCUCGCAACAUUUUCACUUUGAUUUAUAGUUGCGAAAAUAAA -...(((((.....((((..(((.........((((......))))))--)..))))..)))))...(((((.(((((((((..((.....))...)).))))))).))))). ( -17.80, z-score = -1.29, R) >droAna3.scaffold_13337 19704918 87 + 23293914 ---------GGUUAACAUUUUCCUAU--ACUGAUAUC-UAGAUUAUAU--ACUCUAUCUAGCAAUC-UUAUCUUGAAAAGUAAUUC---UUGAUCCGAAUACUUA-------- ---------(((((...(((((....--...(((..(-(((((.....--.....))))))..)))-.......))))).))))).---................-------- ( -9.04, z-score = 0.22, R) >droEre2.scaffold_4784 9776141 110 - 25762168 -CGCCAAUUUGUCUGUACUUUAUUACCCACAAAAGCCAUAAAGCUUAU--AUUGUAUUUAGUUGUUAUUGCUUUAACAACUUUUUCACUUUGAUUUAUAGAGGCGAAAAUAAA -((((......((((((..(((......((((((((......))))..--.))))....((((((((......)))))))).........)))..))))))))))........ ( -20.80, z-score = -2.01, R) >droYak2.chr3L 9762265 110 - 24197627 -CGCCAAUUUGUCUGUACUUUAUUACCCACAAAAGCCAUAAAGCUUAU--AUUGUAUUUAGUUGUUAUUGUUCUAACAACUUUUUCACUUUGAUUUAUGGUUGCGAAAAUAAA -(((...(((((..(((......)))..)))))(((((((((......--..((.....((((((((......))))))))....))......))))))))))))........ ( -21.54, z-score = -2.48, R) >droSec1.super_0 2021698 110 - 21120651 -CGCCAAUUUGUCUCUACUUUAUUACCCACAAAAGCCAUAAAGCUUAU--AUUGUAUUUAGUUGUUAUUGUUCUCGCAACUCUUUCACUUUGAUUUAUAGUUGCGAAAAUAAA -...........................((((((((......))))..--.))))............(((((.((((((((...((.....)).....)))))))).))))). ( -16.70, z-score = -1.50, R) >droSim1.chr3L 9171483 110 - 22553184 -CGCCAAUUUGUCUGUACUUUAUUACCCACAAAAGCCAUAAAGCUUAU--AUUGUAUUUAGUUGUUAUUGUUCUCGCAACUCUUUCACUUUGAUUUAUAGUUGCGAAAAUAAA -...(((((.....((((..(((.........((((......))))))--)..))))..)))))...(((((.((((((((...((.....)).....)))))))).))))). ( -18.80, z-score = -1.83, R) >droWil1.scaffold_180949 5260222 113 + 6375548 UUCUUAAAUAUUUGAAAUCUACUCACUUCGAUUCAGUUCAAAUUGAAUCGGUUUGGUUUACCUAUACAUCUUUUUGUCUCUUUGUAACUUUGUCUCAUCAUGAGAAAAAGAAA ......................(((..((((((((((....))))))))))..)))............(((((((.((....((..((...))..))....)).))))))).. ( -19.70, z-score = -1.35, R) >consensus _CGCCAAUUUGUCUGUACUUUAUUACCCACAAAAGCCAUAAAGCUUAU__AUUGUAUUUAGUUGUUAUUGUUCUCGCAACUUUUUCACUUUGAUUUAUAGUUGCGAAAAUAAA .(((............................((((......))))..............(((((((......)))))))......................)))........ ( -5.85 = -5.57 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:23 2011