| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,786,873 – 9,786,978 |
| Length | 105 |
| Max. P | 0.930793 |
| Location | 9,786,873 – 9,786,978 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Shannon entropy | 0.42236 |
| G+C content | 0.63835 |
| Mean single sequence MFE | -39.73 |
| Consensus MFE | -26.54 |
| Energy contribution | -27.90 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.930793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9786873 105 - 24543557 CCACAAAUGCCCGUACUCCGGAACCGGAGCCAUUCGUUCCGCUACCCCGGGAACUCGCUGCUGCGACUAUGGCGGCUCCUGCUGUGGAAGUGGACGUGGAUGUCC------ ((((...........(((((....)))))((((...((((((.....(((((....((((((........)))))))))))..))))))))))..))))......------ ( -38.50, z-score = -0.93, R) >droSim1.chr3L 9169580 105 - 22553184 CCACAAAUGCCCGAACUCCGGAACCGGAGCCAUUCGUUCCGCUACCCCGGGAACACGCUGCUGCGACUAUGGCGGCUCCUGCUGUGGAAGUGGAUGUGGAUGUCC------ (((((......(((((((((....)))))...)))).((((((.((((((((....((((((........)))))))))))..).)).)))))))))))......------ ( -40.70, z-score = -1.93, R) >droSec1.super_0 2019804 105 - 21120651 CCACAAAUGCCCGAACUCCGGAACCGGAGCCAUUCGUUCCGCUACCCAGGGGACACGCUGCUGCGACUAUGGCGGCUCCUGCUGUGGAAGUGGAUGUGGAUGUCC------ (((((......(((((((((....)))))...)))).((((((.(((((((((...((((((........)))))))))).))).)).)))))))))))......------ ( -44.40, z-score = -2.48, R) >droYak2.chr3L 9760409 111 - 24197627 CCACAAAUGCCCGUACUCCGGAACCGGAGCCAUUCGUCCCGCCGCCCCGGGAAAUCGCCGCUACGACUGUUGCAGCUCCUGCUGUGCAAGUGGACGUGGACGUGGAUGUCC ((((...........(((((....)))))......((((((((((..((((....).))).......(((.(((((....)))))))).)))).)).))))))))...... ( -39.30, z-score = -0.61, R) >droEre2.scaffold_4784 9774382 111 - 25762168 CCACAAAUGCCCGAACUCCGGAACCGGAGCCACUCGUCCCGCCACCCCAGGAAUUCGCUGCUGCGACUACUGCGGCUCCUGCUGUGGAAGUGGACGUGGAUGUGGAUGUCC (((((..........(((((....)))))((((..((((..((((..(((((....(((((..........))))))))))..))))....)))))))).)))))...... ( -45.30, z-score = -2.82, R) >droAna3.scaffold_13337 19703503 88 + 23293914 CCACAAAUGCCCGAGCCCCGGAACCGGAGCUCCUCCUUCCGCCGCCCCCGGAGUUCGCCUCCAUAGCUCUUCCUAGUCCGGCCGCGGA----------------------- ............((((.(((....))).)))).....(((((.(((...((((.....)))).(((......)))....))).)))))----------------------- ( -30.20, z-score = -1.53, R) >consensus CCACAAAUGCCCGAACUCCGGAACCGGAGCCAUUCGUUCCGCCACCCCGGGAACUCGCUGCUGCGACUAUGGCGGCUCCUGCUGUGGAAGUGGACGUGGAUGUCC______ ((((...........(((((....)))))......((((..((((..(((((....(((((..........))))))))))..))))....))))))))............ (-26.54 = -27.90 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:22 2011