Locus 6782

Sequence ID dm3.chr3L
Location 9,749,461 – 9,749,561
Length 100
Max. P 0.918347
window9331

overview

Window 1

Location 9,749,461 – 9,749,561
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 87.19
Shannon entropy 0.21291
G+C content 0.53426
Mean single sequence MFE -29.02
Consensus MFE -22.16
Energy contribution -22.32
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -2.32
Structure conservation index 0.76
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.26
SVM RNA-class probability 0.918347
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 9749461 100 + 24543557
UACAGGUGCCAGAUCCGUUCAGGUAGUUCGUCCUGUCGUUCUGACAUCCUUUCGUCCUAUCGUCCAGUUGGCCUCCUGGUCUACGGAAAACUUCUGGCAA
......((((((((((((...(((((..((...((((.....))))......))..)))))(.((((........)))).).))))).....))))))). ( -31.10, z-score =  -2.45, R)
>droEre2.scaffold_4784 9736220 92 + 25762168
UACAGGUGCCAGAUCCGUUCAGGUAGUUCGUCCUGUCCUCCUGUCGUCC--------UGUCGCUCUGUUGGCCUCCUGGUCUCCGGAAAACUUCUGGCAA
......(((((((..((..((((.((..(.....)..)))))).))...--------......((((..((((....))))..)))).....))))))). ( -28.00, z-score =  -2.03, R)
>droYak2.chr3L 9721661 92 + 24197627
UACAGGUGCCAGAUCCGUUCAGGUAGUUCGUCCUUUCGUCCUGUCGUCC--------UGUCGCUCUGUUGGCCUCCUGGUCUCCGGAAAACUUCUGGCAA
......(((((((..((..(((((((..((......))..)))....))--------)).)).((((..((((....))))..)))).....))))))). ( -29.10, z-score =  -2.52, R)
>droSec1.super_0 1982921 100 + 21120651
UACAGGUGCCAGAUACGUUCAGGAAGUUCGUCCUGUCGUUCUGACGUCCAUUCGUCCUUUUGUCCUGUUGGCCUCCUGGUCACCGUAAAACUUCUGGCAA
......(((((((((((..(((((((..((......))..))((((......))))......))))).(((((....))))).)))).....))))))). ( -31.10, z-score =  -2.60, R)
>droSim1.chr3L 9131055 92 + 22553184
UACAGGUGCCAGAUCCGUUCAGGUAGUUCGUCCUGUCGUUCUGACGUCC--------UUUUGUCCUGUUGGCCUCCUGGUCUCCGUAAAACUUCUGGCAA
......(((((((...(((((((.((..((((..(.....).))))..)--------).....))))..((((....)))).......))).))))))). ( -25.80, z-score =  -2.02, R)
>consensus
UACAGGUGCCAGAUCCGUUCAGGUAGUUCGUCCUGUCGUUCUGACGUCC________UGUCGUCCUGUUGGCCUCCUGGUCUCCGGAAAACUUCUGGCAA
......(((((((((((..((((........))))..................................((((....))))..)))).....))))))). (-22.16 = -22.32 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:20 2011