| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,746,539 – 9,746,659 |
| Length | 120 |
| Max. P | 0.707525 |
| Location | 9,746,539 – 9,746,659 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.92 |
| Shannon entropy | 0.09171 |
| G+C content | 0.33167 |
| Mean single sequence MFE | -21.53 |
| Consensus MFE | -20.12 |
| Energy contribution | -21.32 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9746539 120 + 24543557 AAGAAAAAAUAACAACAAAAUAUUACCAAAAUGCGUCAGCGAUUUGGGGCAUCUCAAGUCGUAAUAACUUCUGUCAUUUCCUUAUCAAACUGACAUUUGAAUAAUGAAAGACAAUAGCUC ....................((((((......((....))((((((((....)))))))))))))).((..((((.((((.((((((((......)))).)))).))))))))..))... ( -24.00, z-score = -2.62, R) >droEre2.scaffold_4784 9733346 120 + 25762168 AAGGAAAAAUAACAACGAAAUAUUACCAAAAUGCGUCAGCGAUUUGGGGCUUCUCAAGUCGUAAUAACUUCUGUCAUUUCCUUAUCAAACUGACAUUUGAAUAACGCAAGACAAUAGGUC (((((((....(((..(((.((((((......((....))((((((((....))))))))))))))..))))))..))))))).(((((......)))))....(....).......... ( -23.30, z-score = -1.41, R) >droYak2.chr3L 9718550 120 + 24197627 AAGAAAAAGUAGCAACAAAAUAUUACCAAAAUGCGUCUGCGAUUUGGGGCUUCUCAAUUCGUAAUAACUUCUGUCAUUUCCUUAUCAAACUGACAUUUGAAUAAUGUAAGACAAUAGGUC ..((..((((.(((.................)))...(((((.(((((....))))).)))))...))))...)).....(((((....((.(((((.....))))).))...))))).. ( -17.63, z-score = 0.39, R) >droSec1.super_0 1980096 120 + 21120651 AAGAAAAAAUAACAACAUAAUAUUACCAAAAUGCGUCAGCGAUUUGGGGCUUCUCAAGUCGUAAUAACUUCUGUCAUUUCCUUAUCAUACUGACAAUUGAAUAAUGAAAAACAAUAGCUC ....................((((((......((....))((((((((....)))))))))))))).((..(((..((((.((((((..........)).)))).)))).)))..))... ( -17.80, z-score = -0.77, R) >droSim1.chr3L 9128258 120 + 22553184 AAGAAAAAAUAACAACAAAAUAUUACCAAAAUGCGUCAGCGAUUUGGGGCUUCUCAAGUCGUAAUAACUUCUGUCAUUUCCUUAUCAAACUGACAUUUGAAUAAUGAAAGACAAUAGGUC ....................((((((......((....))((((((((....)))))))))))))).((..((((.((((.((((((((......)))).)))).))))))))..))... ( -24.90, z-score = -2.57, R) >consensus AAGAAAAAAUAACAACAAAAUAUUACCAAAAUGCGUCAGCGAUUUGGGGCUUCUCAAGUCGUAAUAACUUCUGUCAUUUCCUUAUCAAACUGACAUUUGAAUAAUGAAAGACAAUAGGUC ....................((((((......((....))((((((((....)))))))))))))).((..((((.((((.((((((((......)))).)))).))))))))..))... (-20.12 = -21.32 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:19 2011