| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,740,014 – 9,740,125 |
| Length | 111 |
| Max. P | 0.629076 |
| Location | 9,740,014 – 9,740,125 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.22 |
| Shannon entropy | 0.39110 |
| G+C content | 0.36334 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -14.22 |
| Energy contribution | -14.98 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9740014 111 + 24543557 GAAACCACAUUUUCAGUUCAAUUUGUAGUUCAAAUGCCGAGUUACAAGAGGUCAUCUGAAAUACAUACUAUAUAGUAUGAACUCUCGACCUU--------AUUUCUGGAAAUGGAUCAC .......(((((((((......(((((..((.......))..)))))((((((....((....((((((....))))))...))..))))))--------....)))))))))...... ( -27.20, z-score = -2.59, R) >droEre2.scaffold_4784 9726946 95 + 25762168 GAAACCGCACUUUCAGGUCAAUUUGUAGUUCAGAUG-----UUACGAGAGGUCAUC----------AUUAUAUGAAAUGAGCUUGUGACCC---------AUUUCUGUGAAUUCAUCAC (((..((((......(((((......((((((((((-----...(....)..))))----------.((....))..))))))..))))).---------.....))))..)))..... ( -20.00, z-score = -0.26, R) >droYak2.chr3L 9711621 100 + 24197627 AAAACCGCACUUUCAGGUCAAUUUGUAGUUCAGAUGCCGAGUUACGAGAGGUCAUC----------AAUAUUUGAAAUGAACUUUUGAUAC---------AUUUCUGGGAGUUCAUCAC ......(.(((..((((((((...((..((((((((..((....(....)....))----------..))))))))....))..)))))..---------....)))..))).)..... ( -19.60, z-score = -0.01, R) >droSec1.super_0 1973678 119 + 21120651 GAAACCACAUUUUCAGGUCAAUUUGUAGUUCAGAUACUGAGUUACGAGAGGUCAUUUGAAAUAUAUAUUAUAUGGUAUAAACUCUCGACCUUUUUGACCCAUUUCUCGAAAUGGUUCAC ((((......))))(((((.....(((..((((...))))..)))(((((.((....))....((((((....))))))..))))))))))...(((.((((((....)))))).))). ( -30.10, z-score = -2.62, R) >droSim1.chr3L 9121829 111 + 22553184 GAAACCACAUUUUCAGGUCAAUUUGUAGUUCAGAUACUGAGUUACGAGAGUUCAUCUGACAUACAUAUUAUAUGAUAUGAACUCUCGACCUU--------AUUUCUCGAAAUGGAUCAC ....(((...(((((((((.....(((..((((...))))..)))((((((((((....((((.......))))..))))))))))))))).--------.......)))))))..... ( -30.10, z-score = -3.07, R) >consensus GAAACCACAUUUUCAGGUCAAUUUGUAGUUCAGAUGCCGAGUUACGAGAGGUCAUCUGA_AUA_AUAUUAUAUGAUAUGAACUCUCGACCUU________AUUUCUGGAAAUGGAUCAC .......(((((((((....(((((.....))))).........((((((.((((.....................)))).)))))).................)))))))))...... (-14.22 = -14.98 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:17 2011