| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,738,465 – 9,738,577 |
| Length | 112 |
| Max. P | 0.519071 |
| Location | 9,738,465 – 9,738,577 |
|---|---|
| Length | 112 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.26 |
| Shannon entropy | 0.30074 |
| G+C content | 0.49270 |
| Mean single sequence MFE | -34.66 |
| Consensus MFE | -25.06 |
| Energy contribution | -25.22 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9738465 112 - 24543557 ------GCUCCAGACUGAGUCUUGGCUUUCUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCGGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACG-- ------...((((((.((((..((((...((.((((......(((((.(((((((((...))))))))).)))))(....)....)))).)).)))).))))....))).))).....-- ( -36.60, z-score = -1.70, R) >droSim1.chr3L 9120174 112 - 22553184 ------GCUCCAGACUGGGUCUUGGCUUUCUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCAGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACG-- ------...((((((.(((((((((((....))))......((((((.(((((((((...))))))))).)))))))))))))(.((((....)))))........))).))).....-- ( -35.90, z-score = -1.41, R) >droSec1.super_0 1972031 112 - 21120651 ------GCUCCAGACUGGGUCUUGGCUUUCUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCAGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACG-- ------...((((((.(((((((((((....))))......((((((.(((((((((...))))))))).)))))))))))))(.((((....)))))........))).))).....-- ( -35.90, z-score = -1.41, R) >droYak2.chr3L 9709941 112 - 24197627 ------GCUCCAGUCUGGGUCUUGGCUUUCUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCGGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACG-- ------(((((.(((.(((((((((((....))))......((((((.(((((((((...))))))))).)))))))))))))))).).))))((((((......)))...)))....-- ( -37.50, z-score = -1.76, R) >droEre2.scaffold_4784 9725269 112 - 25762168 ------GCUCCAGACUGGGUCUUGGCUUUCUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCGGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACG-- ------...((((((.(((...((((...((.((((......(((((.(((((((((...))))))))).)))))(....)....)))).)).))))...)))...))).))).....-- ( -36.70, z-score = -1.52, R) >droVir3.scaffold_13049 16509258 89 + 25233164 -----------------------------CUGGCCAAAUCGUGGCCGUAGUUAAGAUAACAUUUUGACUUUGGACUGAGACUAGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACG-- -----------------------------...((((..(((...(((.(((((((((...))))))))).)))..)))(((.(((..(((.....)))..)))...))).))))....-- ( -25.20, z-score = -1.30, R) >droGri2.scaffold_15110 20097431 99 + 24565398 ----------------UUGACUUGGU---CUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGCACUGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACC-- ----------------....((..((---..(((((.....)))))(((((((((((...)))))))))..))))..))(((((....)))))((((((......)))...)))....-- ( -23.80, z-score = 0.16, R) >droWil1.scaffold_180949 5193613 95 + 6375548 --------------------CUUGGC---CUGGCCAAAUCGUGGUUGUUGUUAAGAUAACAUUUUGACUUUGGCCUGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACC-- --------------------....((---(.((((((((((..((((((.....))))))....))).))))))).((((..((.((((....)))))).)))).......)))....-- ( -28.50, z-score = -1.49, R) >droAna3.scaffold_13337 19651986 111 + 23293914 ------CCUCCAGACUGAGUC-UGGCUUUUCGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCAGAGACUGGAUGGCUGGUGCCGCAUUCUUUUGUCAUGGCAACA-- ------...((((((.((((.-((((...(((((((..((.((((((.(((((((((...))))))))).))))))..)).....))))))).)))).))))....))).))).....-- ( -38.60, z-score = -2.19, R) >dp4.chrXR_group6 3392579 117 + 13314419 GACCUCGCUCCGGUCUCGGUCUGGGC---CUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCUGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAAUGGC ...(((((((.((((((((((.....---..)))).......(((((.(((((((((...))))))))).))))).)))))).))..)))))(((((((......)))...))))..... ( -41.30, z-score = -1.61, R) >droPer1.super_61 148160 117 + 350175 GACCUCGCUCCGGUCUCGGUCUGGGC---CUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCUGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAAUGGC ...(((((((.((((((((((.....---..)))).......(((((.(((((((((...))))))))).))))).)))))).))..)))))(((((((......)))...))))..... ( -41.30, z-score = -1.61, R) >consensus ______GCUCCAGACUGGGUCUUGGCUUUCUGGCCAAAUCGUGGUCGUAGUUAAGAUAACAUUUUGACUUUGGCCUGAGACUUGAUGGCGAGUGCCGCAUUCUUUUGUCAUGGCAACG__ .......................(((...((.((((..((..(((((.(((((((((...))))))))).)))))...)).....)))).)).)))........((((....)))).... (-25.06 = -25.22 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:16 2011