| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,730,066 – 9,730,168 |
| Length | 102 |
| Max. P | 0.882597 |
| Location | 9,730,066 – 9,730,168 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 63.52 |
| Shannon entropy | 0.68131 |
| G+C content | 0.34876 |
| Mean single sequence MFE | -11.03 |
| Consensus MFE | -4.83 |
| Energy contribution | -5.00 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.882597 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9730066 102 - 24543557 UGCACAACAUUGACUAACCCGAAGGCUAUCGUCAAUUGCAAUUACAAUUACGAAUACAAUUUCAACUACAAUUUCAAUUCCAAUUCCGAUUCCACUUUCACA ....................(((((..((((..(((((......)))))..(((......))).......................))))....)))))... ( -9.40, z-score = -1.00, R) >droWil1.scaffold_180949 5183961 96 + 6375548 ---UGAAUAUUGUAU---CUAUAUACAUAUAUUUGUGUGAGUGUGUGUGUUGCACACAUUGACUAACCAAAAUCUAUCGACAAUUUCAAUUCCACUUUCACA ---((((.(((((..---...((((((......))))))((((((((.....))))))))...................))))))))).............. ( -19.00, z-score = -0.84, R) >droEre2.scaffold_4784 9717121 83 - 25762168 UGCACAGCAUUGACUAA-CCGAAAGCUAUCGUCAAUUGCAAUUCCAAUUACAAUCUCAAUUUCAAUUCCGAUUCCACUUUCACA------------------ ......((((((((...-.(....).....))))).))).............................................------------------ ( -9.00, z-score = -1.30, R) >droYak2.chr3L 9701665 77 - 24197627 UGCACAACAUUGACUAA-CCGAAAGCUAUCGUCAAUUGCAAUUACAAUUUCAAUUUCAAUUCCGAUUCCACUUUCACA------------------------ .................-..(((((..((((..(((((.((((........)))).))))).))))....)))))...------------------------ ( -10.00, z-score = -2.49, R) >droSec1.super_0 1963605 101 - 21120651 UGCACAACAUUGACUAA-CCGAAGGCUAUCGUCAAUUGCAAUUACAAUUACGAAUACAAUUUCAACUUCAAUUUCAAUUCCAAUUCCGAUUCCACUUUCACA .................-..(((((..((((..(((((......)))))..(((......))).......................))))....)))))... ( -9.40, z-score = -0.88, R) >droSim1.chr3L 9110558 101 - 22553184 UGCACAACAUUGACUAA-CCGAAGGCUAUCGUCAAUUGCAACUACAAUUACGAAUUCAAUUUCAACUUCAAUUUCAAUUCCAAUUCCGAUUCCACUUUCACA .................-..(((((..((((..(((((......)))))..(((......))).......................))))....)))))... ( -9.40, z-score = -0.90, R) >consensus UGCACAACAUUGACUAA_CCGAAGGCUAUCGUCAAUUGCAAUUACAAUUACGAAUACAAUUUCAACUCCAAUUUCAAUUCCAAUUCCGAUUCCACUUUCACA ((((....((((((.....(....).....)))))))))).............................................................. ( -4.83 = -5.00 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:15 2011