| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,728,181 – 9,728,281 |
| Length | 100 |
| Max. P | 0.557646 |
| Location | 9,728,181 – 9,728,281 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Shannon entropy | 0.38371 |
| G+C content | 0.61666 |
| Mean single sequence MFE | -42.88 |
| Consensus MFE | -29.68 |
| Energy contribution | -27.93 |
| Covariance contribution | -1.74 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9728181 100 + 24543557 GGCCGCCAGCUGCUGAUUGUAGUUGGUCAGCGUGGUGGAAAUAAUGGUGUGCCGGCGGGUUUGGCUGAGAGCUGGACA--GGAU-UUCUCCGGCUGUUGCUGC-- ..(((((((((((.....))))))(((((.(((.((....)).))).)).))))))))....(((.((.(((((((..--....-...))))))).)))))..-- ( -38.70, z-score = -1.07, R) >droPer1.super_61 138658 104 - 350175 UGCAGCCAGCUGCUGGUUGUAGUUGGUCAGCGUCGUGGAGAUGAUGGUGUGGCGGCGGGUCUGGCUCAGGGUCGGACACUGGCU-AGUGCCGGCGCCCGUGGCCG ....(((((((((.....)))))))))((.((((((....)))))).)).(((.(((((((((((....((((((...))))))-...))))).)))))).))). ( -53.40, z-score = -2.25, R) >dp4.chrXR_group6 3382982 104 - 13314419 UGCAGCCAGCUGCUGGUUGUAGUUGGUCAGCGUCGUGGAGAUGAUGGUGUGGCGGCGGGUCUGGCUCAGGGUCGGACACUGGUU-AGUGUUGGCGCCCGUGGCCG ....(((((((((.....)))))))))((.((((((....)))))).)).(((.(((((((((((.....)))))(((((....-)))))....)))))).))). ( -46.60, z-score = -1.61, R) >droAna3.scaffold_13337 19642868 102 - 23293914 GGCGGCCAACUGUUGGUUGUAAUUGGUCAGCGUAGUGGAUAUGAUGGUGUGCCGGCGGGUCUGGUUCAAGGCCGGACAAUUGCCGUUUCCCGGAGGCAAUUG--- (.((((..((((((.((((........))))(((.....)))))))))..)))).)..(((((((.....)))))))(((((((..........))))))).--- ( -33.40, z-score = 0.26, R) >droEre2.scaffold_4784 9715214 99 + 25762168 CGCCGCCAGCUGCUGAUUGUAGUUGGUCAGCGUGGUGGAGAUAAUGGUGUGCCGGCGGGUCUGGCUGAUAGCUGGGCA--GGAU-UUCUCCGGCUGCUGCUG--- ....(((((((((.....)))))))))(((((..(((((((.(((..(((.(((((..(((.....))).))))))))--..))-)))))).))..).))))--- ( -43.10, z-score = -1.45, R) >droSec1.super_0 1961649 102 + 21120651 CGCCGCCAGCUGCUGAUUGUAGUUGGUCAGCGUGGUGGAGAUAAUGGUGUGCCGGCGGGUCUGGCUAAGAGCUGGACA--GGAU-UUCUCCGGCUGCUGCUGCUG .((.(((((((((.....)))))))))(((((.(.((((((.(((..(((.(((((.((.....))....))))))))--..))-))))))).))))))..)).. ( -42.10, z-score = -1.05, R) >consensus CGCCGCCAGCUGCUGAUUGUAGUUGGUCAGCGUGGUGGAGAUAAUGGUGUGCCGGCGGGUCUGGCUCAGAGCCGGACA__GGAU_UUCUCCGGCGGCUGCUGC__ .((.(((((((((.....)))))))))..))(((((((.......((....))(.((((((((((.....)))))))....(.....).))).)..))))))).. (-29.68 = -27.93 + -1.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:14 2011