| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,669,048 – 9,669,142 |
| Length | 94 |
| Max. P | 0.791624 |
| Location | 9,669,048 – 9,669,142 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 66.55 |
| Shannon entropy | 0.59718 |
| G+C content | 0.36531 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -7.52 |
| Energy contribution | -7.64 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9669048 94 - 24543557 GCUAAUGCGACAGAUA------UAGAUAUAUGUAUGUUUAUCCAUCCACUAGCUGUGCUAAUCAGCUAGAAUCCG----CAAAGAGAGAAGGCAAAGAGGUAAA .((..((((...((((------(((((((....))))))))..)))..(((((((.......)))))))....))----))...)).................. ( -19.20, z-score = -0.32, R) >droSim1.chr3L 9046365 97 - 22553184 GCUAAUGCGACAGAUAUAU---UAUAUAUAUGUAUGUCUAUCCAUCCACUAGCUGUGCUAAUCAGCUAGAAUCCG----CAAAGAGAGAACGCAAAUAGGUAAA .(((.((((..((((((((---.........)))))))).........(((((((.......)))))))......----...........))))..)))..... ( -21.80, z-score = -1.44, R) >droSec1.super_0 1902784 97 - 21120651 GCUAAUGCAACAGAUAUAU---UAUAUAUAUGUAUAUAUAUCCAUCCACUAGCUGUGCUAAUCAGCUAGAAUCCG----CAAAGAGAGAACGCAAAUAGGUAAA .(((.(((....(((((((---.((((....)))))))))))......(((((((.......)))))))......----............)))..)))..... ( -19.70, z-score = -1.34, R) >droYak2.chr3L 21933490 98 + 24197627 GCUAAUGCGACAGAUAUA----UAUACAUGUAUAUAUCCAUCUACCCACUAGCUGUGCUAAUCAGUUAGAAUCCG--CAAGAGGAGAGAACGCAAAUAAGUAAA .....((((...((((((----(((....)))))))))..(((..((.(((((((.......)))))))....(.--...).))..))).)))).......... ( -26.20, z-score = -3.67, R) >droEre2.scaffold_4784 9652918 102 - 25762168 GCUAAUGCGACAGAUACAUAUACAUAUAUGUAUAUAUCUAUCCAUCCACUAGCUGUGCUAAUCAGCUAGAAUCCG--CACAGGGAGAGAACGCAAAUAAGUAAA .....((((....((((((((....))))))))...(((.(((.....(((((((.......)))))))....(.--....)))).))).)))).......... ( -25.90, z-score = -2.58, R) >dp4.chrXR_group8 661604 78 + 9212921 -----------------------GCUAAUGCGAAUGCCA---UAAGCACUAACAAUGCUAAUCAGUUAGAAUUCGAAUCCGUAAGCAACAAACAAAUAAACAAA -----------------------(((.((((((((((..---...)).(((((...........))))).)))))....))).))).................. ( -10.90, z-score = -1.21, R) >droPer1.super_40 50362 78 + 810552 -----------------------GCUAAUGCGAAUGCCA---UAAGCACUAACAAUGCUAAUCAGUUAGAAUUCGAAUCCGUAAGCAACAAACAAAUAAACAAA -----------------------(((.((((((((((..---...)).(((((...........))))).)))))....))).))).................. ( -10.90, z-score = -1.21, R) >consensus GCUAAUGCGACAGAUA_A____UAUAUAUGUGUAUGUCUAUCCAUCCACUAGCUGUGCUAAUCAGCUAGAAUCCG____CAAAGAGAGAACGCAAAUAAGUAAA ................................................(((((((.......)))))))................................... ( -7.52 = -7.64 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:10 2011