| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,648,591 – 9,648,693 |
| Length | 102 |
| Max. P | 0.523057 |
| Location | 9,648,591 – 9,648,693 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 72.13 |
| Shannon entropy | 0.50292 |
| G+C content | 0.45454 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -7.16 |
| Energy contribution | -7.44 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9648591 102 + 24543557 ACCGGGUCCUUUAGCUGA-CAGCAAAUAUUCACCCCCC-------AUUUCGAUUCAACCAUCAUUCAUUCACCAGUCGUAAAAUUUAGUUUUACGAUUUUCCAGCUC--ACC ....(((.....(((((.-...................-------.....(((......)))...........(((((((((((...)))))))))))...))))).--))) ( -14.90, z-score = -2.44, R) >droSim1.chr3L 9026019 102 + 22553184 ACCGGGUCCUUUAGCCGG-CAGCAAAUAUUCACCCCCC-------AUUUCGAUUCAACCAUCAUUCAUUCACCAGUCGUAAAAUUUAGUUUUACGAUUUUGCAGCUC--ACC .((((.(.....).))))-..(((((............-------.....(((......)))............((((((((((...))))))))))))))).....--... ( -17.90, z-score = -2.59, R) >droSec1.super_0 1882515 91 + 21120651 ------------ACCGGGUCAGCAAAUAUUCACCCCCC-------AUUUCGAUUCAACCAUCAUUCAUUCACCAGUCGUAAAAUUUAGUUUUACGAUUUUGCAGCUC--ACC ------------...((((..(((((............-------.....(((......)))............((((((((((...))))))))))))))).))))--... ( -15.90, z-score = -3.86, R) >droYak2.chr3L 21913192 109 - 24197627 ACCGGGUGCUUAAGCAGG-CAGCAAAUAUUCACCACCCCCCCACUUUUUCGAUUCAACCAUCAUUCAUUCAGCAGUCGUAAAAUUUAGUUUUACGAUUUUCCAGCUC--ACC ...(((((((...((...-..))...........................(((......)))........)))(((((((((((...))))))))))).....))))--... ( -16.00, z-score = -1.43, R) >droEre2.scaffold_4784 9632522 102 + 25762168 UCCGGGUGCUUGAGCAGG-CAGCAAGUAUUCACCCCCC-------UUUUCGAUUCAACCAUCAUUCAUUCACCAGUCGUAAAAUUUAGUUUUACGAUUUUCCAGCUC--ACC ....((((..(((((...-..))...............-------.....(((......)))..)))..))))(((((((((((...))))))))))).........--... ( -18.40, z-score = -1.80, R) >dp4.chrXR_group8 637047 99 - 9212921 ACUUGAUCCCCGAGCAGA-CAGUGGUUGCUUCCUCUC----------UUUGUCUCGGUCUCC--UCUCUGAGUAGUCGUUAAAUUUAGUUUUACGAUUCCCGGGGCCGAACC .........(((((((((-.((.((......)).)).----------)))).)))))..((.--.(((((.(.((((((.((((...)))).)))))).))))))..))... ( -25.90, z-score = -0.62, R) >droPer1.super_40 26742 99 - 810552 ACUUGAUCCCCGAGCAGA-CAGUGGUUGCUUCCUCUC----------UUUGUCUCGGUCUCC--UCUCUGAGUAGUCGUUAAAUUUAGUUUUACGAUUCCCGGGGCCGAACC .........(((((((((-.((.((......)).)).----------)))).)))))..((.--.(((((.(.((((((.((((...)))).)))))).))))))..))... ( -25.90, z-score = -0.62, R) >consensus ACCGGGUCCUUGAGCAGG_CAGCAAAUAUUCACCCCCC_______AUUUCGAUUCAACCAUCAUUCAUUCACCAGUCGUAAAAUUUAGUUUUACGAUUUUCCAGCUC__ACC .........................................................................(((((((((((...))))))))))).............. ( -7.16 = -7.44 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:07 2011