| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,683,810 – 4,683,924 |
| Length | 114 |
| Max. P | 0.905405 |
| Location | 4,683,810 – 4,683,924 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.95 |
| Shannon entropy | 0.41838 |
| G+C content | 0.52773 |
| Mean single sequence MFE | -36.73 |
| Consensus MFE | -20.28 |
| Energy contribution | -21.03 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4683810 114 - 23011544 UCCAGCAAUGGGAGCGCAGUAAGCGCAAGGCUCUCGAUCUCCUCACCAUCGAAAUUGAAAAGGUCCAGGAAAUGGAUCAGG--AGCCAGAGCACAAACAGUCUCAUGAGCAGGACC (((.((.((((((((((.....))))..(((((..((((((((.(((.(((....)))...)))..))))....))))..)--)))).............))))))..)).))).. ( -38.70, z-score = -2.51, R) >droEre2.scaffold_4929 4755720 108 - 26641161 UACAGCGAUGGGAGCGCAGUAAGCGCAAGGCUCUCGAUCUCCUAACAACUGAGAUCGAGAAGGUGCAGGAAAUGGAUCAGG--AGCAAGAGCAGG------CUCAUGAUCUGGACA ....(((......((((.....)))).....((((((((((.........))))))))))...))).......((((((.(--(((........)------))).))))))..... ( -37.20, z-score = -1.95, R) >droYak2.chr2L 4690671 114 - 22324452 UGCAGCAAUGGGAGCGCAGUAAGCGCAAGGCUCUCGACCUCCUGACCAUCGAGAUUGAGAAGGUGCAGGAAAUGGAUCAGG--AGCAAGAGCAGGAGCCGACUCAUGAGCAGGACC ....((.(((((.((((.....))))..((((((.((((((((((((.((........)).))).)))))...)).))...--.((....)).))))))..)))))..))...... ( -40.30, z-score = -1.72, R) >droSec1.super_5 2761352 114 - 5866729 UCCAGCAAUGGGAGCGCAGUAAGCGCAAGGCUCUCGAUCUCCUCACCAUCGAAAUUGAAAAGGUCCAGGAAAUGGAUCAGG--AGCAAGAGCACAAACAGGCCCAUGAGCAGGACC (((.((.(((((.((((.....))))...(((((....(((((.....(((....)))...((((((.....)))))))))--))..))))).........)))))..)).))).. ( -40.10, z-score = -2.91, R) >droSim1.chr2L 4550226 114 - 22036055 UCCAGCAAUGGGAGCGCAGUAAGCGCAAGGCUCUCGAUCUCCUGACCAUCGAAAUUGAAAAGGUCCAGGAAAUGGACCAGG--AGCAAGAGCACAAACAGGCCCAUGAGCAGGACC (((.((.(((((.((((.....))))...(((((....(((((.....(((....)))...((((((.....)))))))))--))..))))).........)))))..)).))).. ( -43.30, z-score = -3.64, R) >droWil1.scaffold_180703 1418229 95 + 3946847 UGCAGCGUUGGGAACGUAGUAAGCGCACUGCUCUUGACUUGCUCACGGUUGAAAUCGAAAAAGUUCAGGACAUGGAUCAAACCGAUACGAAUACA--------------------- .((((.((..(((..(((((......))))))))..))))))...((((((....)......(((((.....)))))..)))))...........--------------------- ( -20.80, z-score = 0.38, R) >consensus UCCAGCAAUGGGAGCGCAGUAAGCGCAAGGCUCUCGAUCUCCUCACCAUCGAAAUUGAAAAGGUCCAGGAAAUGGAUCAGG__AGCAAGAGCACAAACAG_CUCAUGAGCAGGACC .......(((((.((((.....))))...(((((((((.........))))).........((((((.....))))))..........)))).........))))).......... (-20.28 = -21.03 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:12 2011