| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,647,690 – 9,647,800 |
| Length | 110 |
| Max. P | 0.565397 |
| Location | 9,647,690 – 9,647,800 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 65.95 |
| Shannon entropy | 0.56898 |
| G+C content | 0.45389 |
| Mean single sequence MFE | -29.94 |
| Consensus MFE | -8.38 |
| Energy contribution | -9.22 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9647690 110 + 24543557 UUUAACACUCGGAUUUUCCAGCUGAUUCUGAUUCUGCUGGCUUGACAAAGGCCCAGAUAAACUCAGCUCAGC----CAGGCACAAAACGGAUGGAUGUGUCUGUAGCAGAGAUU------ .......(((((.....)).(((((..((((.((((..(((((.....))))))))).....)))).)))))----((((((((...........)))))))).....)))...------ ( -32.90, z-score = -1.28, R) >droAna3.scaffold_13337 3900625 100 + 23293914 --------------UAUAAAUUUUAAACUG------CUGGCUGAAUGAAAUACCAGAUAAACUAAUCACAACUACUCGGACUCGGACUCGGCCCAGAUGUCCUGUUCAGAGAACGAGAGA --------------................------((((............))))...............((.((((..(((((((..(((......)))..)))).)))..)))))). ( -19.80, z-score = -0.80, R) >droEre2.scaffold_4784 9631216 98 + 25762168 UGUUACACCCGGAUUUUCUGGCUGAUUCUG------CUGGCUUGACAAAAACCCAGAUAAACUCAGCUCAGC----CAGACAUAAAACGGAUG------UCUGUAGCAGAGAUU------ (((((((.(((..((.(((((((((..(((------((((.((......)).)))).......))).)))))----))))...))..)))...------..)))))))......------ ( -29.31, z-score = -2.60, R) >droYak2.chr3L 21912279 98 - 24197627 UUUUACGCUCGGAUUUUCCGGCUGAUUCUG------CUGGCUUGACAAAAAGCCAGAUAAACUCAGUUCAGC----CGGGCACAAAGCGGAUG------UCUGUAGCAGAGAUU------ ......((((((((..(((((((((..(((------(((((((......))))))).......))).)))))----)..((.....))))).)------)))).))).......------ ( -37.61, z-score = -3.53, R) >droSec1.super_0 1881669 90 + 21120651 --------------UUUUACACUUUUUCUG------CUGGCUUGACAAAAGCCCAGAUAAACUCAGCUCAGC----CAGGCACAAAACGGCUGGAUGUGUCUGUAGCAGAGAUU------ --------------..........((((((------(((((((.....)))))((((((....((..(((((----(.(........))))))).)))))))).))))))))..------ ( -30.00, z-score = -2.44, R) >droSim1.chr3L 9025170 90 + 22553184 --------------UUCUACAUUUUUUCUG------CUGGCUUGACAAAAGCCCAGAUAAACUCAGCUCAGC----CAGGCACAAAACGGCUGGAUGUGUCUGUAGCAGAGAUU------ --------------..........((((((------(((((((.....)))))((((((....((..(((((----(.(........))))))).)))))))).))))))))..------ ( -30.00, z-score = -2.41, R) >consensus ______________UUUCAAGCUGAUUCUG______CUGGCUUGACAAAAGCCCAGAUAAACUCAGCUCAGC____CAGGCACAAAACGGAUGGAUGUGUCUGUAGCAGAGAUU______ .........................(((((......((((.((......)).))))..............................((((((......))))))..)))))......... ( -8.38 = -9.22 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:06 2011