Locus 6768

Sequence ID	dm3.chr3L
Location	9,640,704 – 9,640,773
Length	69
Max. P	0.914148

overview

Window 5

Location	9,640,704 – 9,640,773
Length	69
Sequences	5
Columns	69
Reading direction	reverse
Mean pairwise identity	90.00
Shannon entropy	0.17944
G+C content	0.42899
Mean single sequence MFE	-18.16
Consensus MFE	-17.62
Energy contribution	-17.82
Covariance contribution	0.20
Combinations/Pair	1.09
Mean z-score	-1.40
Structure conservation index	0.97
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.24
SVM RNA-class probability	0.914148
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 9640704 69 - 24543557
UUUGGAGUCGUGGCUACCAUCACUCAAACGGAAUUGUUGUCAAACGAAAUUGCUGACAAUUCACGGGUA
....((((.((((...)))).))))...(((((((((((.(((......))).))))))))).)).... ( -18.90, z-score =  -1.80, R)
>droSim1.chr3L 9017981 69 - 22553184
UUUGGAGUCGUGGGUUCCAUCGCUCAAACGGAAUUGUUGUCAAACGAAAUUGCUGACAAUUCAUGAAUA
....((((.((((...)))).)))).....(((((((((.(((......))).)))))))))....... ( -17.20, z-score =  -1.18, R)
>droSec1.super_0 1874628 69 - 21120651
UUUAGAGUCGUGGGUUCCAUCGCUCAAACGGAAUUGUUGUCAAACGAAAUUGCUGACAAUUCAUGAAUA
....((((.((((...)))).)))).....(((((((((.(((......))).)))))))))....... ( -17.40, z-score =  -1.64, R)
>droYak2.chr3L 21905236 69 + 24197627
UUCGGAGUCGUGGUUGCCAUCGCUCAAACGGAAUUGUUGUCAAACGAAAUUGCGUACAAUUCACGGGUG
....((((.((((...)))).))))...(((((((((((.(((......))))).))))))).)).... ( -17.80, z-score =  -0.62, R)
>droEre2.scaffold_4784 9624215 69 - 25762168
UUUGGAGUCGUGGUUCCCAUCGCUCAAACGGAAUUGUUGUCAAACCAAAUUGGUUACAAUUCACGGGUA
....((((.((((...)))).))))...(((((((((..((((......))))..))))))).)).... ( -19.50, z-score =  -1.76, R)
>consensus
UUUGGAGUCGUGGGUUCCAUCGCUCAAACGGAAUUGUUGUCAAACGAAAUUGCUGACAAUUCACGGGUA
....((((.((((...)))).))))...(((((((((((.(((......))).))))))))).)).... (-17.62 = -17.82 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:05 2011