| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,620,797 – 9,620,906 |
| Length | 109 |
| Max. P | 0.835351 |
| Location | 9,620,797 – 9,620,906 |
|---|---|
| Length | 109 |
| Sequences | 8 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 66.46 |
| Shannon entropy | 0.69094 |
| G+C content | 0.34823 |
| Mean single sequence MFE | -24.39 |
| Consensus MFE | -12.73 |
| Energy contribution | -11.59 |
| Covariance contribution | -1.14 |
| Combinations/Pair | 1.75 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9620797 109 - 24543557 UUAUGGUCUACUUUGUGACCAUAGCUCUGGAGAUCACUCUGUACAACGUGAGUGCACAGAAGGUGGAGAGCCAGGUAUA-UUAUAUUGUAUAAUU-UCAAUUUUUAUGUAA----- ((((((((........)))))))).(((((...(((((((((...((....))..)))))..))))....)))))((((-(...((((.......-.))))....))))).----- ( -29.40, z-score = -1.69, R) >droEre2.scaffold_4784 9604883 114 - 25762168 UUAUGGUCUACUUUGUGACCAUAGCUCUGGAAAUCACUUUGUACAACGUGAGUGCACAGAAGGUGGAGAGCCAGGUAUG-UUUUAUUGUAUUAUU-ACAAUUUUGAUUUAAGGAAA .(((((((........)))))))((.((((...(((((((.(...((....))....).)))))))....))))))..(-((..((((((....)-)))))...)))......... ( -28.90, z-score = -1.58, R) >droSec1.super_0 1854846 109 - 21120651 UUAUGGUCUACUUUGUGACCAUAGCUCUGGAGAUCACUCUGUACAACGUGAGUGCACAGAAGGUGGAGAGCCAGGUAUA-UUAUAUUGUAUAAUU-UUAAUGUUUAUGCAA----- ((((((((........))))))))..((((...(((((((((...((....))..)))))..))))....))))(((((-..((((((.......-.)))))).)))))..----- ( -32.30, z-score = -2.35, R) >droSim1.chr3L 8995772 109 - 22553184 UUAUGGUCUACUUUGUGACCAUAGCUCUGGAGAUCACUCUGUACAACGUGAGUGCACAGAAGGUGGAGAGCCAGGUAUA-UUAUAUUGUAUAAUU-UUAAUGUUUACGUAA----- ((((((((........))))))))..((((...(((((((((...((....))..)))))..))))....))))(((..-..((((((.......-.)))))).)))....----- ( -29.30, z-score = -1.49, R) >droAna3.scaffold_13337 3861223 115 - 23293914 UUAUGGUUUAUUUUGUGACCAUUGCCCUAGAAAUUAGCUUGUACAAUUUAAGUGCUCAAAAAGUAGAAACUCAGGUAGG-CUAAAGAAUACUACUACUAGUGUUUUCAUUAUUUGA ..((((((........))))))..................((((.......))))(((((.(((..((((.(.(((((.-.............))))).).))))..))).))))) ( -20.14, z-score = 0.44, R) >droVir3.scaffold_13049 14885912 106 + 25233164 UUAUGGUUUACUUGGUAACAAUUACUUUGGAAAUCAGCCUAUAUAAUGUCAAUGCGCAAAAGGUCGAGUCUCAGGUAA---UGUAAUCCCUUGAACAUAUC---UUUAUAUA---- .....(((((...(((.(((.((((((.(((..((.((((......(((......)))..)))).)).))).))))))---))).)))...))))).....---........---- ( -16.70, z-score = 0.54, R) >droMoj3.scaffold_6680 10438409 114 - 24764193 UAUUUGUUUACUUUUUGACAAUUCUUUUCGAAAUCAGUUUAUAUAAUGUCAAUGCGCAGAGGUUGGAGACACAGGUAAUUCUUGAGGAACUCAAAUGUGCAGACCAUAAUAUAA-- ...(((((........))))).................((((((.(((....(((((((((..((....))((((.....)))).....)))...))))))...))).))))))-- ( -20.50, z-score = 0.03, R) >droGri2.scaffold_15110 8902329 115 - 24565398 UUAUGGUUUAUUUACUCACCAUUACUUUGGAAAUCAGCCUGUAUAAUGUCAAUGCGCAAAAGGUCGAGACUCAGGUAAGCCUGCAAAUAUUCCUAUUUACUAAACUAAUAAAUGA- ....((..(((((.(((.(((......)))......((((((((.......)))).....)))).)))...((((....)))).)))))..))......................- ( -17.90, z-score = 0.39, R) >consensus UUAUGGUCUACUUUGUGACCAUAGCUCUGGAAAUCACUCUGUACAACGUGAGUGCACAGAAGGUGGAGACCCAGGUAUA_UUAUAUUGUAUAAUU_UUAAUGUUUAUAUAA_____ ((((((((........)))))))).(((((...((..(((.....((....)).......)))..))...)))))......................................... (-12.73 = -11.59 + -1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:02 2011