Locus 6763

Sequence ID	dm3.chr3L
Location	9,597,722 – 9,597,812
Length	90
Max. P	0.533067

overview

Window 9

Location	9,597,722 – 9,597,812
Length	90
Sequences	13
Columns	115
Reading direction	forward
Mean pairwise identity	78.56
Shannon entropy	0.42010
G+C content	0.57073
Mean single sequence MFE	-33.45
Consensus MFE	-17.76
Energy contribution	-17.45
Covariance contribution	-0.31
Combinations/Pair	1.42
Mean z-score	-1.58
Structure conservation index	0.53
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.08
SVM RNA-class probability	0.533067
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 9597722 90 + 24543557
GCGACGUGCAUCCAGUCCCAUGGAUCACGUUCUGGACAGUGUGGAGCGACGACGCUCCAGUGUCUAUACGACAAGUUCAGGCAAGU-CUGU------------------------
((((((((.(((((......)))))))))))((((((....(((((((....))))))).((((.....)))).))))))))....-....------------------------ ( -38.10, z-score =  -3.08, R)
>droSim1.chr3L 8972465 90 + 22553184
GCGACGCGCAUCCAGUCCCAUGGAUCACGUCCUGGACAGUGUGGAGCGGCGACGCUCCAGUGUCUAUACGACAAGUUCAGGCAAGU-CUGC------------------------
((((((.(.(((((......)))))).))))((((((....(((((((....))))))).((((.....)))).))))))))....-....------------------------ ( -39.50, z-score =  -3.00, R)
>droSec1.super_0 1828691 90 + 21120651
GCGACGUGCAUCCAGUCCCAUGGAUCACGUCCUGGACAGUGUGGAGCGGCGACGCUCCAGUGUCUAUACGACAAGUUCAGGCAAGU-CUGU------------------------
((((((((.(((((......)))))))))))((((((....(((((((....))))))).((((.....)))).))))))))....-....------------------------ ( -43.40, z-score =  -4.33, R)
>droYak2.chr3L 21862102 90 - 24197627
GAGACGUGCAUCCAGUCCCAUGGAUCACGUGCUGGACAGUGUGGAGCGGCGACGCUCCAGUGUCUAUACGACAAGUUCAGGCAAGU-CCGU------------------------
.(((((((.(((((......)))))))))).))((((....(((((((....))))))).(((((..((.....))..))))).))-))..------------------------ ( -40.40, z-score =  -3.48, R)
>droEre2.scaffold_4784 9581726 91 + 25762168
GAGACGUGCAUCCAGUCCCAUGGAUCAGGUCCUGGACAGUGUGGAGCGGCGACGCUCCAGUGUCUAUACGACAAGUUCAGGCAAGUUCCGU------------------------
..(((.((.(((((......))))))).)))((((((....(((((((....))))))).((((.....)))).))))))...........------------------------ ( -37.50, z-score =  -2.90, R)
>droAna3.scaffold_13337 3839975 88 + 23293914
GCGACGGGCAUCCAGUCCCAUGGAUCACGUCCUGGAUAGUGUGGAGCGGCGGCGCUCGAGUGUCUAUACGACCAGUUCAGGCAAGUAC---------------------------
((((((.(.(((((......)))))).))))((((((......(((((....)))))..(.(((.....)))).))))))))......--------------------------- ( -28.60, z-score =   0.29, R)
>dp4.chrXR_group8 9177279 88 + 9212921
GCGACGAGCAUCUAGUCCCAUGGAUCACGUGCUGGAUAGUGUGGAGCGGCGGCGCUCCAGUGUCUAUACGACAAGUUCAGGCAAGGCA---------------------------
((..(.(((((.(.((((...)))).).))))).)......(((((((....))))))).(((((..((.....))..)))))..)).--------------------------- ( -29.00, z-score =   0.04, R)
>droPer1.super_50 526961 88 - 557249
GCGACGAGCAUCUAGUCCCAUGGAUCACGUGCUGGAUAGUGUGGAGCGGCGGCGCUCCAGUGUCUAUACGACAAGUUCAGGCAAGGCA---------------------------
((..(.(((((.(.((((...)))).).))))).)......(((((((....))))))).(((((..((.....))..)))))..)).--------------------------- ( -29.00, z-score =   0.04, R)
>droWil1.scaffold_180698 1448463 115 - 11422946
ACGGCGAGCAUCAAGUCCCAUGGAUCACGUGCUGGAUAGUGUGGAGCGGCGACGCUCUAGUGUCUAUACGACUAGUUCAGGCAAGUCACCUACGACAACAACAUUUCCCCCAAGC
..((.((((((...((((...))))...)))))(((.(((((((((((....))))))..(((((..((.....))..))))).(((......)))....))))))))))).... ( -33.90, z-score =  -0.51, R)
>droVir3.scaffold_13049 14865334 89 - 25233164
GCGGCGUGCAUCGAGUCCCAUGGAUCACAUGCUCGAUAAUGUGGAGCGGCGACGCUCCAGUGUUUAUACAACAAGCUCAGGCAAGGCUC--------------------------
..(((.(((((((((...((((.....))))))))))....(((((((....)))))))(.((((.......)))).)..)))..))).-------------------------- ( -30.90, z-score =  -1.17, R)
>droGri2.scaffold_15110 8881860 88 + 24565398
GCGACGAGCAUCCAGUCCCAUGGAUCACAUGCUGGAUAGUGUGGAGCGGCGACGCUCCAGUGUUUAUACAACAAGCUCAGGCAAGCAC---------------------------
((..(((((((((((...((((.....))))))))))....(((((((....)))))))...............)))).)....))..--------------------------- ( -33.00, z-score =  -2.52, R)
>droMoj3.scaffold_6680 10417644 89 + 24764193
GCGCCGAGCAUCGAGUCCCAUGGAUCACGUGCUGGAUAGUGUGGAGCGGCGGCGCUCCAGUGUUUAUACCACAAGCUCAGGCAAGGCUC--------------------------
..(((((((.....((((((((.....))))..)))).((((((((((....)))))))(((....))))))..)))).))).......-------------------------- ( -32.40, z-score =  -0.51, R)
>triCas2.chrUn_6 428490 90 + 1398711
UAGCUCACCUUUCAGCCCCGACAUUUUACUAAGCAAUGAGGGCGGCCGCAGACGCUCUUCUGUUUUCACCACUAGUUCCGGAGAGUAAGU-------------------------
..((((.((.....((((...((((.........)))).))))((..(((((......)))))..))............)).))))....------------------------- ( -19.20, z-score =   0.59, R)
>consensus
GCGACGAGCAUCCAGUCCCAUGGAUCACGUGCUGGAUAGUGUGGAGCGGCGACGCUCCAGUGUCUAUACGACAAGUUCAGGCAAGUCCC__________________________
.......((.....((((...)))).......((((((...(((((((....))))))).))))))..............))................................. (-17.76 = -17.45 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:14:00 2011