| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,582,364 – 9,582,459 |
| Length | 95 |
| Max. P | 0.616701 |
| Location | 9,582,364 – 9,582,459 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 84.42 |
| Shannon entropy | 0.26180 |
| G+C content | 0.50202 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -19.86 |
| Energy contribution | -20.10 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9582364 95 + 24543557 AACCCCUCCCCCUU----GACGAACACUCUUACACAGGCAAGGCGUAGUUUGACGUCAUCAACGCGUUGCUGCUGCCAAAAAUAAGAGGGAAAAAAAUA--------- ...(((((..((((----(..((....))...)).)))...((((((((..(((((.......)))))))))).)))........))))).........--------- ( -23.30, z-score = -1.40, R) >droSim1.chr3L 8963376 94 + 22553184 -ACCCCUCCCCCCC----AGCGAACACUCUUACACUGGCAAGGCGUAGUUUGACGUCAUCAACGCGUUGCUGCUGCCAAAAAUAAGAGGGGAAAAAAUA--------- -.((((((....((----((.(..........).))))...((((((((..(((((.......)))))))))).)))........))))))........--------- ( -29.70, z-score = -2.74, R) >droSec1.super_0 1810417 92 + 21120651 -ACCCCUCCCCCC-----AGCGAACACUCUUACACUGGCAAGGCGUAGUUUGACGUCAUCAACGCGUUGCUGCUGCCAAAAAUAAGAGGG-AAAAAAUA--------- -..(((((...((-----((.(..........).))))...((((((((..(((((.......)))))))))).)))........)))))-........--------- ( -26.20, z-score = -2.22, R) >droYak2.chr3L 21846649 101 - 24197627 -ACCCCUGCCCC------AUCGAACACUCUUACACGGGCGAGGCGUAGUUUGACGUCAUCAACGCGUUGCUGCUGCCAAAAUGAAGAGGGGGAAAAAGGAAAAAAAUA -.(((((((((.------...((....))......))))..((((((((..(((((.......)))))))))).))).........)))))................. ( -29.40, z-score = -0.96, R) >droEre2.scaffold_4784 9566613 96 + 25762168 -UCCCCUGCCCCCCACCCAUCGAAAACUCUUACACAGGCAAGGCGUAGUUUGACGUCAUCAACGCGUUGCUGCUGCCAAAAUGAAGGGGGAAAAAUA----------- -(((((((((..........................)))..((((((((..(((((.......)))))))))).)))........))))))......----------- ( -26.57, z-score = -1.09, R) >consensus _ACCCCUCCCCCC_____AGCGAACACUCUUACACAGGCAAGGCGUAGUUUGACGUCAUCAACGCGUUGCUGCUGCCAAAAAUAAGAGGGAAAAAAAUA_________ ...(((((.............((....))............((((((((..(((((.......)))))))))).)))........))))).................. (-19.86 = -20.10 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:59 2011