| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,570,226 – 9,570,342 |
| Length | 116 |
| Max. P | 0.769843 |
| Location | 9,570,226 – 9,570,342 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 50.28 |
| Shannon entropy | 0.83834 |
| G+C content | 0.39247 |
| Mean single sequence MFE | -33.26 |
| Consensus MFE | -5.56 |
| Energy contribution | -9.50 |
| Covariance contribution | 3.94 |
| Combinations/Pair | 1.68 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.17 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.769843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9570226 116 - 24543557 --ACUUUGCUCUGGAAGCUAUGGAAAACAAGGAGUAUGCAGUAGGUGCCUUUCUUGAUAUUCAACAGGCAUUUGACAGAGUCUGGCACCCUGGGCUCCUGUACAAAGCGAAGAGGCUG- --.(((((((.((...(((.((.....))...))).((((((((((((((...(((.....))).)))))))))...(((((..(....)..)))))))))))).)))))))......- ( -34.80, z-score = -0.23, R) >droWil1.scaffold_181148 3777500 117 - 5435427 --AGAUUGUUAAACAGAAUUUUAAUAGGAAAAACUCUGUUGGAAUGGUACUAAUGGAUAUUAAAGCAGCUUUCCAUUCUGUCUGGCACAACGGACUCAUUUUCAAGAUGUCAGUCCUUA --....(((((.((((((((((((((((......))))))))))).......(((((..............)))))))))).)))))....(((((((((.....))))..)))))... ( -27.34, z-score = -1.37, R) >anoGam1.chr3R 12670292 119 + 53272125 ACAAUAUUUUGAACGGAAUAAGAGGGUGAGCAAGUCCACCAUGGUCGCAAUGUUGGAUGUUGAAAAGGCAUUUGACAAUGUUUGGCAUGAUGGACUUGUUCAUAAACUUGUCACCUUUG .(((....)))...((.(((((...(((((((((((((.((((.(.(((.(((..((((((.....))))))..))).)))..).)))).)))))))))))))...)))))..)).... ( -44.20, z-score = -4.80, R) >triCas2.chrUn_210 1476 117 + 10089 --AAAAUAUCCUACAAAACUUCAUUACAGGAAAAAAGGCCGGAGCUGUUUUCCUGGAUGUAGCAAAAGCAUUUGAUAAAGUAUGGCACAAUGGCCUACUUUACAAACUAAUAAAAUAUA --................((.((((.((((((((..(((....))).)))))))))))).))........((((.(((((((.(((......))))))))))))))............. ( -26.70, z-score = -2.32, R) >consensus __AAAAUGUUCAACAAAAUAUGAAUAAGAAAAAGUAUGCCGGAGUUGCAUUACUGGAUAUUGAAAAAGCAUUUGACAAAGUCUGGCACAAUGGACUCCUUUACAAACUGAUAAACCUUA ...........................(((((((((((.((....(((((((.((((((((.....)))))))).))))))).....)).))))))))))).................. ( -5.56 = -9.50 + 3.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:57 2011