| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,677,426 – 4,677,533 |
| Length | 107 |
| Max. P | 0.714322 |
| Location | 4,677,426 – 4,677,533 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 64.41 |
| Shannon entropy | 0.70781 |
| G+C content | 0.35611 |
| Mean single sequence MFE | -20.69 |
| Consensus MFE | -7.19 |
| Energy contribution | -7.09 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.714322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4677426 107 - 23011544 UUUGAGC--CUGAUGGAAUGCACUGAUAUGUGAAAUGAUUUGACGUUUGAUUUGUAAAUGAAAUUAAACGGGCGGUGAAAA---CUUCAGUAAAAUGAAGAAGGACGAGGAA-------- ((((.((--(..........(((......)))...........((((((((((.......)))))))))))))........---(((((......))))).....))))...-------- ( -21.00, z-score = -2.12, R) >droYak2.chr2L 4683037 107 - 22324452 UUUGAGC--CUGAUGGAAUGCACUGAUAUGUGAAAUGAUUUGACGUUUGAUUUGUAAAUGAAAUUAAACGGGCGGUGAAAA---CUCCAGCAGAACGUAGAAGGACAUGGAA-------- .....((--((.(((...(((......................((((((((((.......))))))))))((.(((....)---)))).)))...)))...))).)......-------- ( -22.60, z-score = -1.52, R) >droEre2.scaffold_4929 4748329 107 - 26641161 UUUAAGC--CUGAUGGAAUGCACUGAUAUGUGAAAUGAUUUGACGUUUGAUUUGUAAAUGAAAUUAAACGGGCGGUGAAAA---UUCCAGUAAAACAGAGAAGGACAAGGAA-------- .....((--((..((((((.(((((.(((.....)))......((((((((((.......))))))))))..)))))...)---)))))............))).)......-------- ( -21.64, z-score = -1.95, R) >droSec1.super_5 2754199 86 - 5866729 UUUGAGC--CUGAUGGAAUGCACUGAUAUGUGAAAUGAUUUGACGUUUGAUUUGUAAAUGAAAUUAUACGGGCGGUGAAAA-----CGAGGAA--------------------------- .....((--(((........(((......)))..(((((((..((((((.....))))))))))))).))))).((....)-----)......--------------------------- ( -16.30, z-score = -1.81, R) >droSim1.chr2L 4541941 86 - 22036055 UUUGAGC--CUGAUGGAAUGCACUGAUAUGUGAAAUGAUUUGACGUUUGAUUUGUAAAUGAAAUUAAACGGGCGGUGAAAA-----CGAGGAA--------------------------- .....((--(..........(((......)))...........((((((((((.......))))))))))))).((....)-----)......--------------------------- ( -16.80, z-score = -2.13, R) >droAna3.scaffold_12943 1859528 113 + 5039921 UUCGAGC--CUGAUGGAAUGCAGUGAUAUGUGAAAUGAUUUGACGUUUGAUUUGUAAAUGAAAUUAAACGGGCAUUGAAAA---UUCCGCAGGGGCCAAAGGAGGCAAAAAAUGGGAA-- (((...(--(((.((((((.(((((.(((.....)))......((((((((((.......))))))))))..)))))...)---))))))))).(((......)))........))).-- ( -29.90, z-score = -2.53, R) >dp4.chr4_group3 516671 114 + 11692001 ----AGG--UUGAUGAAAUCCAUUGAUAUGUGAAAUAAUUUGACGUUUGAUUUUAAAAUGAAAUUAAACGGGCACCGGAAAGUCUCCCUGCCCUUUGAAGUGGGUCAAAAACUGAUGUCA ----..(--(..(((.....)))..))...........((((((((((((((((.....))))))))))(((((..(((.....))).)))))..........))))))........... ( -28.50, z-score = -1.88, R) >droPer1.super_8 1560374 114 + 3966273 ----AGG--UUGAUGAAAUCCAUUGAUAUGUGAAAUAAUUUGACGUUUGAUUUUAAAAUGAAAUUAAACGGGCACCGGAAAGUCUCCCUGCCCUUUGAAGUGGGUCAAAAACUGAUGUCA ----..(--(..(((.....)))..))...........((((((((((((((((.....))))))))))(((((..(((.....))).)))))..........))))))........... ( -28.50, z-score = -1.88, R) >droVir3.scaffold_12963 8588404 87 + 20206255 UUUGAAUAAACGGUGAAAUCCAUUGAUAUGUAAAACGAUUUGACAUUUCAUUUGUCAAUGAAAUUAAAUGGGAAUCA-------AAAUGGGAAU-------------------------- (((((.....(((((.....)))))..........(.((((((..(((((((....))))))))))))).)...)))-------))........-------------------------- ( -12.50, z-score = 0.56, R) >droMoj3.scaffold_6500 12048449 87 + 32352404 UUUGAAUAGGCAGCGAAAUGCAUUGAUAUGUAAAACGAUUUGACAUUUAAUUUGUCAAUGAAAUUAAAUGAGCAUCG-------AAAUGCGAAU-------------------------- .........(((.(((..(((((....)))))...........((((((((((.......))))))))))....)))-------...)))....-------------------------- ( -15.80, z-score = -0.36, R) >droGri2.scaffold_15126 3215311 94 + 8399593 UUUGAAUAAGCGGCGAAAUGCAUUGAUAUGUAAAGCGAUUUGACAUUCCAUUUGUCAAUGAAAUUAAAUGGGACUUGUGGACACUAAUGGGAAU-------------------------- (((..((.((.(((....(((((....)))))..))..........(((((..(((.((........))..)))..)))))).)).))..))).-------------------------- ( -14.10, z-score = 0.66, R) >consensus UUUGAGC__CUGAUGGAAUGCACUGAUAUGUGAAAUGAUUUGACGUUUGAUUUGUAAAUGAAAUUAAACGGGCAGUGAAAA___UUCCAGGAAU____A____G_C____A_________ ...........................................((((((((((.......)))))))))).................................................. ( -7.19 = -7.09 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:11 2011