| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,553,232 – 9,553,328 |
| Length | 96 |
| Max. P | 0.824992 |
| Location | 9,553,232 – 9,553,328 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 76.97 |
| Shannon entropy | 0.43883 |
| G+C content | 0.30498 |
| Mean single sequence MFE | -19.55 |
| Consensus MFE | -9.72 |
| Energy contribution | -10.58 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9553232 96 + 24543557 UUUCAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCAGAAAACUGCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUG-AACAAAAAUCGAC .((((.......(((((((.(((((....))))))))))))..(((((((((((((.....)))))))......)))))).))-))........... ( -21.20, z-score = -2.87, R) >droEre2.scaffold_4784 9538267 93 + 25762168 -UUUAAAAUACAUAUCUGUUCAGAUAAUUGUUUCGAGGAAUU--GCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUG-AACAAAAAUCGAC -.(..(((((..(((((....)))))..)))))..)(..(((--((((((((((((.....)))))))......)))))))).-..).......... ( -17.20, z-score = -1.84, R) >droYak2.chr3L 21822434 93 - 24197627 -UUUAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCGGAACU--GCCUUUGUGUUUAUUUAAAACAUAUUCAAAAGGGCAAUG-AACAAAAAUCGAC -.........(((((((((.(((((....))))))))))).(--((((((((((((.....)))))))......)))))))))-............. ( -17.70, z-score = -1.48, R) >droSec1.super_0 1786835 94 + 21120651 UUUCAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCAGAACA--GCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUG-AACAAAAAUCGAC .((((........((((((.(((((....)))))))))))..--((((((((((((.....)))))))......)))))..))-))........... ( -19.30, z-score = -2.27, R) >droSim1.chr3L 8937151 94 + 22553184 UUUCAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCAGAACA--GCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUG-AACAAAUAUCGAC .((((........((((((.(((((....)))))))))))..--((((((((((((.....)))))))......)))))..))-))........... ( -19.30, z-score = -2.29, R) >droGri2.scaffold_15110 8843740 94 + 24565398 GAGAAGACUACGUGCAGGCUGAGUUGCGCCUCUGGCACAUUA--AUUUUCUCCUCCAUUUGCAGAAAAUUAAUUAGAUUUGUCUGGCAAAAAACAU- (((((((.((.((((((((........))))...))))..))--.))))))).....(((((((((((((.....))))).))).)))))......- ( -22.60, z-score = -1.09, R) >consensus UUUCAAAAUACAUUUCUGUUGAGAUAAUUGUUUCGCAGAACA__GCCUUUGUGUUUAUUUAAAACAUAUUAAAAAGGGCAAUG_AACAAAAAUCGAC .............((((((.(((((....)))))))))))....((((((((((((.....)))))))......))))).................. ( -9.72 = -10.58 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:56 2011