| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,545,338 – 9,545,438 |
| Length | 100 |
| Max. P | 0.724927 |
| Location | 9,545,338 – 9,545,438 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 85.74 |
| Shannon entropy | 0.21907 |
| G+C content | 0.35867 |
| Mean single sequence MFE | -25.55 |
| Consensus MFE | -20.54 |
| Energy contribution | -20.60 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9545338 100 + 24543557 CAAAGAGACCAAAGUAGCAAAUAAUCAGUAGUUGAGCUUAAAGUUUGGCUGUGUUUGCUUACAGUGGGCACUUAAUAUAGUGAAAGGUGUAAUAUAUUAA-------- ........(((..((((((((((.....((((..(((.....)))..))))))))))).)))..)))((((((...........))))))..........-------- ( -24.60, z-score = -1.89, R) >droSim1.chr3L 8929323 99 + 22553184 CAAAGAGACCAA-GCAGCAAAAAAUCACUAGUUGAGCUUACAGUUUGGCUGUGUUUGCUUACAGUGGGCACUUAAUAUAGUGAAAGGUGCACACUAUUAA-------- ............-..((((((....(((.(((..(((.....)))..))))))))))))...((((.((((((...........)))))).)))).....-------- ( -25.30, z-score = -0.68, R) >droSec1.super_0 1778826 100 + 21120651 CAAAGAGACCAAAGCAGCAAAAAAUCACUAGUUGAGCUUACAGUUUGACUGUGUUUGCUUACAGUGGGCACUUAAUAUAGUGAAAGGUGCAAACUGUUAA-------- ...............((((((....(((.(((..(((.....)))..)))))))))))).(((((..((((((...........))))))..)))))...-------- ( -26.90, z-score = -1.41, R) >droYak2.chr3L 21814173 106 - 24197627 CAAAGAGACCAAAAUAGCAAAUAAUCAGAAGUUGAGCUUAAAGUUUGGCUGUGUUUGCAUACAGUGGGCA--UAAUAUACUGAAAAGUGUAAACUAAAAAAAUUGGUA .......(((((....(((((((......(((..(((.....)))..))).)))))))............--...((((((....))))))...........))))). ( -25.40, z-score = -2.79, R) >consensus CAAAGAGACCAAAGCAGCAAAAAAUCACUAGUUGAGCUUAAAGUUUGGCUGUGUUUGCUUACAGUGGGCACUUAAUAUAGUGAAAGGUGCAAACUAUUAA________ ................(((.....((((((((..(((.....)))..)).(((((..(.....)..)))))......))))))....))).................. (-20.54 = -20.60 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:54 2011