| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,527,162 – 9,527,218 |
| Length | 56 |
| Max. P | 0.881513 |
| Location | 9,527,162 – 9,527,218 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Shannon entropy | 0.46548 |
| G+C content | 0.67250 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -19.52 |
| Energy contribution | -19.67 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9527162 56 + 24543557 ACGCCGCUCCGCUGCUGGCGUACCCGGCAGCGCAGCUACGCGGAUU-AGCCUAAGUC .(((.(((.(((((((((.....))))))))).)))...)))....-.......... ( -24.60, z-score = -1.39, R) >droSim1.chr3h_random 862076 54 + 1452968 GCGUCGCUGCGCUGCAGGCUAUGCCGGCAGCGCUGCUCCUGGACUU-AGGCUAAG-- .....((.(((((((.(((...))).))))))).)).((((....)-))).....-- ( -23.20, z-score = -0.31, R) >droSec1.super_6 689025 54 - 4358794 GCGUCGCUGCGCUGCAGGCUAUGCCGGCAGCGCUGCUCCUCGACUU-AGGCUAAG-- ..(((((.(((((((.(((...))).))))))).)).....)))..-........-- ( -22.50, z-score = -0.35, R) >droYak2.chrX_random 1263066 54 - 1802292 GAGCCGCUCCGCUGCUGUCGUAUCCGGCAGCGCAGCUACGCGGCUU-AGCCUUCG-- (((((((...((((((((((....)))))..)))))...)))))))-........-- ( -25.70, z-score = -2.37, R) >droEre2.scaffold_4855 234991 53 - 242605 --GCCGCUCCGCUGCUGGCGUAGCUGGCAGCGCAGCUACGCGGUUUUAGGUUUAG-- --((.(((.((((((..((...))..)))))).)))...))..............-- ( -22.10, z-score = -0.41, R) >droPer1.super_81 10316 56 + 277874 CUGCCGCUCCGCUGCCGGCGUCACUGGCAGCGCAGCUCCGCGGCUUUUGGCUUACA- ((((.(((.(((((((((.....))))))))).)))...)))).............- ( -24.70, z-score = -1.01, R) >consensus GCGCCGCUCCGCUGCUGGCGUAGCCGGCAGCGCAGCUACGCGGCUU_AGGCUAAG__ ..((((((.(((((((((.....))))))))).))).....)))............. (-19.52 = -19.67 + 0.14)
| Location | 9,527,162 – 9,527,218 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 74.91 |
| Shannon entropy | 0.46548 |
| G+C content | 0.67250 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -17.50 |
| Energy contribution | -18.33 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9527162 56 - 24543557 GACUUAGGCU-AAUCCGCGUAGCUGCGCUGCCGGGUACGCCAGCAGCGGAGCGGCGU ......((..-...))((((.(((.((((((.((.....)).)))))).))).)))) ( -24.80, z-score = -0.54, R) >droSim1.chr3h_random 862076 54 - 1452968 --CUUAGCCU-AAGUCCAGGAGCAGCGCUGCCGGCAUAGCCUGCAGCGCAGCGACGC --........-.......(..((.(((((((.(((...))).))))))).))..).. ( -23.30, z-score = -1.40, R) >droSec1.super_6 689025 54 + 4358794 --CUUAGCCU-AAGUCGAGGAGCAGCGCUGCCGGCAUAGCCUGCAGCGCAGCGACGC --.....(((-......))).((.(((((((.(((...))).))))))).))..... ( -23.50, z-score = -1.19, R) >droYak2.chrX_random 1263066 54 + 1802292 --CGAAGGCU-AAGCCGCGUAGCUGCGCUGCCGGAUACGACAGCAGCGGAGCGGCUC --........-.((((((....((((((((.((....)).)))).)))).)))))). ( -25.30, z-score = -1.68, R) >droEre2.scaffold_4855 234991 53 + 242605 --CUAAACCUAAAACCGCGUAGCUGCGCUGCCAGCUACGCCAGCAGCGGAGCGGC-- --............(((((((((((......)))))))((.....))...)))).-- ( -18.60, z-score = -0.40, R) >droPer1.super_81 10316 56 - 277874 -UGUAAGCCAAAAGCCGCGGAGCUGCGCUGCCAGUGACGCCGGCAGCGGAGCGGCAG -.....(((.....(....).(((.(((((((.(.....).))))))).)))))).. ( -25.90, z-score = -1.05, R) >consensus __CUAAGCCU_AAGCCGCGGAGCUGCGCUGCCGGCUACGCCAGCAGCGGAGCGGCGC ..................(..(((.((((((.((.....)).)))))).)))..).. (-17.50 = -18.33 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:51 2011