| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,472,589 – 9,472,703 |
| Length | 114 |
| Max. P | 0.545615 |
| Location | 9,472,589 – 9,472,703 |
|---|---|
| Length | 114 |
| Sequences | 9 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.39 |
| Shannon entropy | 0.44263 |
| G+C content | 0.55469 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -16.26 |
| Energy contribution | -16.09 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9472589 114 + 24543557 CCAUUUUUAUACCCUCACCCGAGUCCUCCGGUCGAAUGACAAGACAGAGGGCUUUUUUCGAGCCCGUUAAGGUUCCGCCGCACAAGGAGGAACCUGGAGCUCAUGAUCCACCAA ..............(((...((((((((..(((.........))).)))))))).....((((((....(((((((.((......)).))))))))).)))).)))........ ( -37.30, z-score = -2.46, R) >droEre2.scaffold_4784 9464299 114 + 25762168 CCAUUUUUAUACCCUCACCCGAGUCCUCCGGACGAAUGACAAGACAGAGGGCUUUUUUUGAGCCUGUUAAGGUUCCGCCGCACCAGGAGGAACCUGCAACCCAUGAUUCCCCAA .............(((....)))......(((...(((..........((((((.....))))))(((.(((((((.((......)).)))))))..))).)))...))).... ( -29.90, z-score = -1.31, R) >droYak2.chr3L 21746052 114 - 24197627 CCAUUUUUAUACCCUCACCCGAGUCCUCCGGCCGAAUGACAAGACAGAGGGCUUUUUUCGAGCCCGUUAAGGUUCCGCCGCACCAGGAGGAACCUGCAGCCCAUGAUUCCCCAA ....................(((((....(((................((((((.....))))))((..(((((((.((......)).))))))))).)))...)))))..... ( -33.20, z-score = -1.97, R) >droSec1.super_0 1713690 114 + 21120651 CCAUUUUUAUACCCUCACCCGAGUCCUCCGGUCGAAUGACAAGGCAGAGGGCUUUUUUUGAGCCCGUUAAGGUUCCGCCGCACCAGGAGGAAUCUGAAGCUCAUGAUCCACCAA ..............(((...((((((((..(((.........))).))))))))....(((((......(((((((.((......)).)))))))...))))))))........ ( -32.30, z-score = -0.85, R) >droSim1.chr3L 8861016 114 + 22553184 CCAUUUUUAUACCCUCACCCGAGUCCUCCGGUCGAAUGACAAGGCAGAGGGCUUUUUUUGAGCCCGUUAAGGUUCCGCCGCACCAGGAGGAAUCCGGAACUCAUGAUCCACCAA ..................(((..((((((.(((....)))..(((...((((((.....)))))).....(....))))......))))))...)))................. ( -33.50, z-score = -1.02, R) >dp4.chrXR_group8 2366308 105 + 9212921 CCAUAUUCAUACCCUCGCCCGAGUCCUCGGGCCGGAUGACGCGACAGCGGGCUUUUUUCGAGCCAGUCAAGGUGCCACCCCAGCAAGAGGAGCCAGAAAAGGCGA--------- ............((((((((((....)))))).((.((((((....)).(((((.....))))).)))).((.....)))).....)))).(((......)))..--------- ( -38.30, z-score = -1.65, R) >droPer1.super_24 867383 105 - 1556852 CCAUAUUCAUACCCUCGCCCGAGUCCUCGGGCCGGAUGACGCGACAGCGGGCUUUUUUCGAGCCAGUCAAGGUGCCACCCCAGCAAGAGGAGCCAGAAAAGGCGA--------- ............((((((((((....)))))).((.((((((....)).(((((.....))))).)))).((.....)))).....)))).(((......)))..--------- ( -38.30, z-score = -1.65, R) >droAna3.scaffold_13337 3725833 114 + 23293914 CCAUUUUUAUACCUUCACCCGAGUCAUCGGGUCGCAUGACCAGACAGAGGGCUUUUUUCGAGCCAGUGAAGGUUCCUCCCCACCAGGAGGAGCCUUCAAGCCAAGAGCGCGCAA ................((((((....))))))(((....((.......))((((((...(.((...(((((((((((((......))))))))))))).))))))))))))... ( -43.30, z-score = -4.11, R) >droGri2.scaffold_15110 17258968 110 - 24565398 CCAUUUUCAUACCCUCCCCGGAAUCAUCGGGACGCAUGACGCGACAGCGUGCUUUUUUUGAGCCUGUCAAAGUGCCACCAAAGCAAGAGCCGUCAGAAGUGGAGGAGAAG---- ............(((((((((.....))))).(((.(((((((((((...((((.....)))))))))....(((.......)))...).)))))...))))))).....---- ( -31.60, z-score = -0.99, R) >consensus CCAUUUUUAUACCCUCACCCGAGUCCUCCGGUCGAAUGACAAGACAGAGGGCUUUUUUCGAGCCCGUUAAGGUUCCGCCGCACCAGGAGGAACCUGAAACCCAUGAUCCACCAA ................(((.((....)).)))..........(((....(((((.....))))).)))..((((((.(........).)))))).................... (-16.26 = -16.09 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:48 2011