| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,405,507 – 9,405,598 |
| Length | 91 |
| Max. P | 0.993197 |
| Location | 9,405,507 – 9,405,598 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 67.08 |
| Shannon entropy | 0.64577 |
| G+C content | 0.29328 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -8.05 |
| Energy contribution | -8.80 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.60 |
| SVM RNA-class probability | 0.993197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9405507 91 + 24543557 GAGUGUUGGCAUAUUUUGUU----AUUUCCCG-AUUUUUA---UCAUUCGAAAUUCAAAGAU-UGUUCUUGUAC---UUAAUUUUGUAAAUAUGUCGACAUAC------- ..((((((((((((((....----.......(-((....)---))...(((((((..((((.-...))))....---..))))))).))))))))))))))..------- ( -19.70, z-score = -2.74, R) >droSim1.chr3L 8795004 91 + 22553184 GAGUGUUGGCAUAUUUUGUU----AUUUCUCG-AUUUUUA---UCAUUCGAAAUUCAAAGAU-UGUUCUUGUAC---UUAAUUUUGUAAAUAUGUCGACAUAC------- ..((((((((((((((....----.......(-((....)---))...(((((((..((((.-...))))....---..))))))).))))))))))))))..------- ( -19.70, z-score = -2.63, R) >droSec1.super_0 1650650 91 + 21120651 GAGUGUUGGCAUAUUUUGUU----AUUUCUCG-AUUUUUA---UCAUUCGAAAUUCAAAGAU-UGUUCUUGUAC---UUAAUUUUGUAAAUAUGUCGACAUAC------- ..((((((((((((((....----.......(-((....)---))...(((((((..((((.-...))))....---..))))))).))))))))))))))..------- ( -19.70, z-score = -2.63, R) >droYak2.chr3L 21682454 91 - 24197627 GAGUGUUGGCAUAUUUUGUU----AUUUCCCG-AUUUUUA---UCAUUCGAAAUUCAAAGAU-UGUUCUUGUAC---UUAAUUUUGUAAAUAUGUCGACAUAC------- ..((((((((((((((....----.......(-((....)---))...(((((((..((((.-...))))....---..))))))).))))))))))))))..------- ( -19.70, z-score = -2.74, R) >droEre2.scaffold_4784 9400473 91 + 25762168 GAGUGUUGGCAUAUUUUGUU----AUUUCCCG-AUUUUGA---UCAUUCGAAAUUCAAAGAU-UGUUCUUGUAC---UUAAUUUUGUAAAUAUGUCGACAUAC------- ..((((((((((((((.(((----(......(-(((((((---....))))))))..((((.-...))))....---.)))).....))))))))))))))..------- ( -21.70, z-score = -3.06, R) >droAna3.scaffold_13337 16992031 102 + 23293914 GCGUGUUGGCAUAUUUUGUUGGCUAUUUCUCAUAUUUCUAAUGCCAUUCCAAAUUCAAUGAU-UGUUGUUGUGUAUUUUAAUUUUGUAAAUAUGUCGACAUAC------- ..((((((((((((((...((((...................))))...((....((((...-.))))...))..............))))))))))))))..------- ( -20.31, z-score = -1.58, R) >dp4.chrXR_group3a 1411669 99 + 1468910 GCGUGUUGGCAUAUUUUUUUGGUUCCCUCAAAAUCACUCAA---AAUCCGAAAUUCAAUGAU-UGUUCUUGUAU-UCUUAAUUUUGUAAAUAUGUCGACAUCCA------ (.((((((((((((((((((((.....)))))).....(((---(((..(((...(((.((.-...)))))..)-))...)))))).)))))))))))))).).------ ( -20.70, z-score = -3.04, R) >droPer1.super_23 1441227 99 + 1662726 GCGUGUUGGCAUAUUUUUUUGGUUCCCUCAAAAUCACUCAA---AAUCCGAAAUUCAAUGAU-UGUUCUUGUAU-UCUUAAUUUUGUAAAUAUGUCGACAUCCA------ (.((((((((((((((((((((.....)))))).....(((---(((..(((...(((.((.-...)))))..)-))...)))))).)))))))))))))).).------ ( -20.70, z-score = -3.04, R) >droWil1.scaffold_180698 1568780 91 + 11422946 -------------UUUUUUU------UUUUGUUACUAUCAGAAUGAUAUAAUUCUUGAUGAUAUAUAGUUAUUGUUGUCGAUAUCAUAAAUAUCUUGUGUUUGGCUCAGC -------------.......------.........(((((((((......)))).)))))...........(((..(((((...(((((.....))))).))))).))). ( -12.50, z-score = 0.31, R) >droVir3.scaffold_13049 10253668 76 + 25233164 ----GUUGGCAUAUUUU----------GCGCAUAUCCCGA----AAUUC----UUUGAUUGU-UCUUGUUGUAU----UAAUUUUGUAAAUAUGUCGACACUU------- ----((((((((((((.----------(((..........----(((..----...((....-))..)))....----......)))))))))))))))....------- ( -12.75, z-score = -1.13, R) >droMoj3.scaffold_6680 14229594 76 - 24764193 ----GUUGGCAUAUUUU----------GCGCUUAUCCCAA----AAUUC----UUUGAUUGU-UCAUGUUGUAU----UAAUUUUGUAAAUAUGUCGACAUUU------- ----((((((((((((.----------(((..........----(((..----..(((....-))).)))....----......)))))))))))))))....------- ( -14.55, z-score = -2.06, R) >droGri2.scaffold_15110 15574296 75 - 24565398 ----GUUGGCAUAUUUUU---------GCGCAUAUUCCGA----AAUUCG---UUUGAUUGU-UCUU---GUAU----UAAUUUUGUAAAUAUGUCGACAUUU------- ----((((((((((((..---------..........(((----((((.(---(..((....-))..---..))----.))))))).))))))))))))....------- ( -14.02, z-score = -1.31, R) >consensus GAGUGUUGGCAUAUUUUGUU____AUUUCUCA_AUUUUUA___UCAUUCGAAAUUCAAUGAU_UGUUCUUGUAU___UUAAUUUUGUAAAUAUGUCGACAUAC_______ ....((((((((((((.......................................................................))))))))))))........... ( -8.05 = -8.80 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:43 2011