| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,395,401 – 9,395,504 |
| Length | 103 |
| Max. P | 0.592568 |
| Location | 9,395,401 – 9,395,504 |
|---|---|
| Length | 103 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 59.77 |
| Shannon entropy | 0.85601 |
| G+C content | 0.32517 |
| Mean single sequence MFE | -14.76 |
| Consensus MFE | -5.79 |
| Energy contribution | -5.88 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.57 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9395401 103 - 24543557 UAAUUAAAGAAUUAAAUAAUUCGAAUAAUAAUUAAGCCCAG-UAACCUACGCAGCUUGAGUGCGUAACCGAUAUCUAGUAUACAUUUCGAU-ACAUCGA-AAUCAU ........(((((....))))).........((((((...(-((...)))...))))))((((..............))))..(((((((.-...))))-)))... ( -13.24, z-score = -0.56, R) >droSim1.chr3L 8783304 103 - 22553184 UAAUUAAAGAAUUAAAUAAUUCUAAUAAUAGUUAAGCCCCG-UUACCUACGCAGUUCGAGUGCGUAACCGAUAUCUAGUAUAUAUUUCGAU-ACAUCGA-AAUCAU .......((((((....))))))..................-.....((((((.......)))))).................(((((((.-...))))-)))... ( -13.50, z-score = -0.39, R) >droSec1.super_0 1640762 103 - 21120651 UAAUUAAAGAAUUAAAUAAUUCUAAUAAUAGUUAAGCCCAG-UUACCUACGCAGUUCGAGUGCGUAACCGAUAUCUAGUAUAUAUUUCGAU-ACAUCGA-AAUCAU .......((((((....))))))..................-.....((((((.......)))))).................(((((((.-...))))-)))... ( -13.50, z-score = -0.48, R) >droYak2.chr3L 21672413 103 + 24197627 UAAUUAAAGAAUUAAAUAAUUCGUUUAAUAAUUAAGCCCAA-UACCCUACGCAGUGCGAGUGCGUAACCGAUAUCAAGUAUAUAUUUCGAU-AGAUCGA-AAUCAU ..(((((((((((....))))).))))))............-.....((((((.......)))))).................(((((((.-...))))-)))... ( -14.80, z-score = -0.96, R) >droEre2.scaffold_4784 9390430 103 - 25762168 UAAUUAAAGAAUUAAAUAAUUCGUAUAAUAAUUAAGCCCAG-UAACCUACGCAGUCCGAGUGCGUAACCGAAGUGUUGUAUAUAUUUCGAU-ACAUCGA-AAUCAU ........(((((....)))))((((...............-.....((((((.......))))))..((((((((.....))))))))))-)).....-...... ( -17.50, z-score = -1.86, R) >droAna3.scaffold_13337 16981810 94 - 23293914 UAAUUAAAGAAUUAACCAAAUCUA-----AAUUAAGAGCGACUAGCUUACGCAGUACGAGUGCGUAUCUGAAUUAAGGAACA-GUGACGAC-UUCUACA-AU---- ........................-----......((((.....)))).....(((.((((.(((..(((..........))-)..)))))-)).))).-..---- ( -13.30, z-score = 0.20, R) >dp4.chrXR_group8 692486 101 + 9212921 UAACUAAAGAAUUUAGUAAAACUA-----AAUAAACCGCUAGUCUUUUACGCAAAUCAAGUGCGUAUUUAAGUUUUUGUUAACCACGCGCUCAGAGCGACAACCAU ((((.(((((((((((.....)))-----)))...........(((.((((((.......))))))...))))))))))))....(((.......)))........ ( -16.20, z-score = -0.59, R) >droPer1.super_40 81183 101 + 810552 UAACUAAAGAAUUUAGUAAAACUA-----AAUAAACCGCUAGUCUUUUACGCAAAUCAAGUGCGUAUUUAAGUUUUUGUUAACCACGCGCUCAGAGCGACAACCAU ((((.(((((((((((.....)))-----)))...........(((.((((((.......))))))...))))))))))))....(((.......)))........ ( -16.20, z-score = -0.59, R) >droVir3.scaffold_13049 5772904 97 + 25233164 -----CAAUUAUUUAAC-GUUUAACAGAUAAUUACCGGGAGUUUCAAUACGCAAAUCGAGUGCGUAUACGGUAUUUUAC-AAAAUAAACUCU-CGUUGACAUCAU- -----............-........(((..(((.(((((((((..(((((((.......)))))))...(((...)))-.....)))))))-)).))).)))..- ( -18.90, z-score = -1.85, R) >droMoj3.scaffold_6680 17592227 97 + 24764193 -----CAAUUAUUUAAC-GUUUAACUGAUAAUUGCCGGGUAUCUUAGUACGCAAAUCGAGUGCGUAUACAGUAAUUUCUUAAUA-AAAUUCU-CAUUGACAUCAU- -----((((((((....-........))))))))...(((.((...(((((((.......)))))))..((.(((((.......-)))))))-....)).)))..- ( -11.50, z-score = 0.74, R) >droGri2.scaffold_15110 7417801 97 + 24565398 -----CAAUUAUUUAAC-GUUUACCGAA--ACUAACCGCGGUUUUAGUACGCCCAUCGAGUGCGUAUAUAGUAUUUUUUAAAAAUAAACUCUCCGUUGACAAAAU- -----.......(((((-(......(((--(((......)))))).((((((.(.....).))))))..........................))))))......- ( -13.70, z-score = 0.03, R) >consensus UAAUUAAAGAAUUAAAUAAUUCUAAUAAUAAUUAAGCGCAG_UUACCUACGCAGAUCGAGUGCGUAUCCGAUAUUUUGUAAAUAUUUCGAU_ACAUCGA_AAUCAU ...............................................((((((.......))))))........................................ ( -5.79 = -5.88 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:40 2011