| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,390,190 – 9,390,300 |
| Length | 110 |
| Max. P | 0.888239 |
| Location | 9,390,190 – 9,390,300 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 68.33 |
| Shannon entropy | 0.53902 |
| G+C content | 0.40777 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -10.64 |
| Energy contribution | -10.04 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9390190 110 + 24543557 CCCCCCAACUGGCGCCACCAAAAAUAUACAUUUGCAUACAUAUGCAAUGUAUGAAUGUUUGUGUGUGUAUACACAUUGCUAUUGUUUUGGGAAAACCCAUGCGAAAUGCA ...........(((((((.(((..((((((((.((((....))))))))))))....)))))).))))........(((..((((..((((....)))).))))...))) ( -26.70, z-score = -0.32, R) >droEre2.scaffold_4784 9384951 92 + 25762168 ----CCCACUGA-AGUGCCAAA----UAUACAUACAUAUGCAUACUAU------GUGUGUGUGG-UGCAUAUACUGCGCCUUUGUUU--GGAAAACCUAUGCGAUGUGCG ----..(((...-.)))(((((----((.(((((((((((.....)))------))))))))((-((((.....))))))..)))))--)).........((.....)). ( -27.40, z-score = -1.84, R) >droYak2.chr3L 21666957 91 - 24197627 ----CCCACGGGCAGUGCCAAA----UAUAUACAUAUGUAUAUGC-AU------AUGUUUGUA--UGGAUAUACUGCGCCUUUGUUC--GGAAAACCUAUGCGAAGUGCG ----.......(((((((((..----((((.((((((((....))-))------)))).))))--)))...))))))((((((((..--((....))...)))))).)). ( -29.50, z-score = -2.42, R) >droSec1.super_0 1635521 101 + 21120651 ------ACCCCACUGUACCAAA--UAUACAUUUGCAUACAUAUGCAAUGUUUGUAUGUUUGUGGGUGAAUACACUUUGCCUUUGUUU-GGGAAAACCCAUGCGAACUGCG ------.((((((......(((--((((((.((((((....))))))....)))))))))))))).)..........((.(((((.(-(((....)))).)))))..)). ( -29.90, z-score = -2.64, R) >droSim1.chr3L 8778085 92 + 22553184 ---------------UACCAAA--UAUACAUUUGCAUACAUAUGCAAUGUUUGUAUGUUUGUGUGUGAAUACACUUUGCCUUUGCUU-GGGAAAACCCAUGCAAACUGCG ---------------...((((--((((((.((((((....))))))....)))))))))).((((....))))...((.(((((.(-(((....)))).)))))..)). ( -29.90, z-score = -4.00, R) >consensus ____CCAACUGACAGUACCAAA__UAUACAUUUGCAUACAUAUGCAAUGU_UG_AUGUUUGUGGGUGAAUACACUUUGCCUUUGUUU_GGGAAAACCCAUGCGAACUGCG ............................(((.((((.((((.............)))).)))).))).........(((((((((...(((....)))..)))))).))) (-10.64 = -10.04 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:39 2011