| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,368,362 – 9,368,453 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 9,368,362 – 9,368,453 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 72.01 |
| Shannon entropy | 0.51843 |
| G+C content | 0.58196 |
| Mean single sequence MFE | -23.82 |
| Consensus MFE | -13.23 |
| Energy contribution | -12.85 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.92 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 9368362 91 + 24543557 CACCGCUGCACUUGGCCGAUCCGAUCCGAUUCGUUUCGAUCCC-AUCCGAUGCGCCUCGUCCGGAUGACUCAUCUAUCGUCUCCGCCAUCAU---- ............((((.((..((((.(((......)))....(-((((((((.....))).))))))........))))..)).))))....---- ( -22.50, z-score = -0.35, R) >droSim1.chr3L 8760569 88 + 22553184 CACCGCUGCACUUGGCCGAUCCGAUCCGAUUCGUUUCGAACCC-AUCCGAUGCGCCUCGUCCGGAUGAGUCAUCUAUCGUCUCCGCCAA------- ............((((.((..((((.(((......))).((.(-((((((((.....))).)))))).)).....))))..)).)))).------- ( -23.10, z-score = -0.51, R) >droYak2.chr3L 21648647 95 - 24197627 CACCGCUGCACUUGGCCGAUCCGAUCGGAUUCGUUUCGAUCCC-GUCCGAUGCGCCUCGUCCGGAUGACUCAUCUAUCGUCUCCGCCAUCAGCCAU ....((((....((((.((..((((((((.....))))))).(-((((((((.....))).))))))...........)..)).)))).))))... ( -29.30, z-score = -1.16, R) >droEre2.scaffold_4784 9367476 90 + 25762168 CACCGCUGCACUUGGCCGAUCCGA-----UUCGUUUCGAUCCC-GUCCGAUGCGCCUCGUCCGGAUGACUCAUCUAUCGUCUCCGCCAUCAGCCAU ....((((....((((.((..(((-----((((...)))...(-((((((((.....))).))))))........))))..)).)))).))))... ( -24.70, z-score = -0.98, R) >droAna3.scaffold_13337 16958488 85 + 23293914 CACCGCUGCACUUGUCCGCUCCGCUCCGAUUCGUUGCGAUCCCCAUCCGAUGCGCCUCGUCCGGAUGAGUCAUC----GAGUCAGCUAU------- ....((((.(((((...((((...((((...((..((((((.......))).)))..))..)))).))))...)----))))))))...------- ( -27.90, z-score = -2.00, R) >droGri2.scaffold_15110 4768498 75 - 24565398 ----------GUUGGACGACACGCU----UGUGUCUUGUUUGUUAACCUUCGCGCAUCGCGCUAAUGAUUCAUCCACCAAUCCGCCCAU------- ----------(((((..(((((...----.))))).((..((.........((((...))))........))..)))))))........------- ( -15.43, z-score = -0.50, R) >consensus CACCGCUGCACUUGGCCGAUCCGAUCCGAUUCGUUUCGAUCCC_AUCCGAUGCGCCUCGUCCGGAUGACUCAUCUAUCGUCUCCGCCAU_______ ............(((((((..(((......)))..)))......((((((((.....)))).))))..................))))........ (-13.23 = -12.85 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:38 2011