| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,366,940 – 9,367,015 |
| Length | 75 |
| Max. P | 0.686438 |
| Location | 9,366,940 – 9,367,015 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 94.42 |
| Shannon entropy | 0.10617 |
| G+C content | 0.43904 |
| Mean single sequence MFE | -22.85 |
| Consensus MFE | -18.82 |
| Energy contribution | -19.40 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9366940 75 - 24543557 AUUUUCUUCGCCCUUUGCUGAUGCAAUUUUCCACUUUGCCUGAAAUCGGGCAAUGGCAUUUAGUU-AGGGGUUGUU .........((((((.((((((((...........(((((((....)))))))..))).))))).-)))))).... ( -24.72, z-score = -2.75, R) >droSim1.chr3L 8759176 75 - 22553184 AUUUUCUUCGCCCUUUGCUGAUGCAAUUUUCCGCUUUGCCUGAAAUCGGGCAAUGGCAUUUAGCU-AGGGGUUGUU .........((((((.((((((((...........(((((((....)))))))..))).))))).-)))))).... ( -26.22, z-score = -2.54, R) >droSec1.super_0 1616347 75 - 21120651 AUUUUCUUCGCCCUUUGCUGAUGCAAUUUUCCGCUUUGCCUGAAAUCGGGCAAUGGCAUUUAGUU-AGGGGUUGUU .........((((((.((((((((...........(((((((....)))))))..))).))))).-)))))).... ( -24.72, z-score = -2.35, R) >droYak2.chr3L 21647244 75 + 24197627 AUUUUCUUCGCCCUUUGCUGAUGCAAUUUUCCGCUUUGCCUGAAAUCGGGCAUUGGCAUUUAGUU-AGGGGUUGUC .........((((((.((((((((............((((((....))))))...))).))))).-)))))).... ( -23.66, z-score = -2.20, R) >droEre2.scaffold_4784 9366153 75 - 25762168 AUUUUCUUCGCCCUUUGCUGAUGCAAUUUUCCGCUUUGCCUGAAAUCGGACAAUGGCAUUUAGUU-AGGGGUUGUU .........((((((.((((((((.(((.((((.(((.....))).)))).))).))).))))).-)))))).... ( -22.80, z-score = -2.29, R) >droAna3.scaffold_13337 16957162 76 - 23293914 AUUUUCCUCGCCUUUUUCUGAUGCAAUUUUCCGCUUUGACUGAAAUCGGGCAAUGGCAUUUAACUCAGGGGUUGCU .........((...(..(((((((.(((.((((.(((.....))).)))).))).)))......))))..)..)). ( -15.00, z-score = 0.31, R) >consensus AUUUUCUUCGCCCUUUGCUGAUGCAAUUUUCCGCUUUGCCUGAAAUCGGGCAAUGGCAUUUAGUU_AGGGGUUGUU .........(((((..((((((((...........(((((((....)))))))..))).)))))...))))).... (-18.82 = -19.40 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:37 2011