| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,325,805 – 9,325,918 |
| Length | 113 |
| Max. P | 0.500000 |
| Location | 9,325,805 – 9,325,918 |
|---|---|
| Length | 113 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.75 |
| Shannon entropy | 0.32412 |
| G+C content | 0.52127 |
| Mean single sequence MFE | -36.87 |
| Consensus MFE | -26.15 |
| Energy contribution | -26.16 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 9325805 113 - 24543557 -----GCGCAAAGACGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGGGAUCAAGGGGCUGAU-- -----(((......))).(((....))).......(((((..(((.(((((((((((.((((((..(((.....)))..)))).)).)))))))))..))...).))..)))))....-- ( -37.00, z-score = -0.83, R) >droWil1.scaffold_181024 629403 113 + 1751709 -----AUGCGAAGUUGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGUUGGCACGUGGAAUAG-- -----.((((....))))(((....)))(((..(((((....(.(...(((((((((.((((((..(((.....)))..)))).)).)))))))))..))....))))).))).....-- ( -38.50, z-score = -1.82, R) >droSim1.chr3L 8719429 111 - 22553184 -----GCGCAAAGACGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGGGAUCAAGGGGCAG---- -----(((......))).(((....)))......((((((..(((.(((((((((((.((((((..(((.....)))..)))).)).)))))))))..))...).))..)))))).---- ( -38.40, z-score = -1.46, R) >droSec1.super_0 1575862 111 - 21120651 -----GCGCAAAGACGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGGGAUCAAGGGGCAG---- -----(((......))).(((....)))......((((((..(((.(((((((((((.((((((..(((.....)))..)))).)).)))))))))..))...).))..)))))).---- ( -38.40, z-score = -1.46, R) >droYak2.chr3L 21601416 109 + 24197627 -----GCGCAAAGACGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGGGAUCAUCGGGG------ -----(((......))).........((((......((((.(..((..(((((((((.((((((..(((.....)))..)))).)).))))))))))).)))))......))))------ ( -36.30, z-score = -1.05, R) >droEre2.scaffold_4784 9324487 107 - 25762168 -----GCGCAAAGACGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGGGAUCACCGG-------- -----(((......))).(((((...(((.....((((..........(((((((((.((((((..(((.....)))..)))).)).))))))))).))))))).)))))..-------- ( -37.00, z-score = -1.70, R) >droAna3.scaffold_13337 19730240 113 - 23293914 GCAUACCGGGAAGACGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUUGCUGGCCGG---CAAGGGAAUG---- ...(((((.(....).).)))).....(((....((((...((.(...(((((((((.((((((..(((.....)))..)))).)).)))))))))..)))))---)).)))....---- ( -33.20, z-score = -0.10, R) >droGri2.scaffold_15110 16269546 104 + 24565398 ----------ACGUCGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGAUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGUUGCC--UGCAGCUGCA---- ----------..((.((((((...((((.....((.(....).))...((((((((......(((((((((........))))))))))))))))).)))))))--))).))....---- ( -33.70, z-score = -1.04, R) >droVir3.scaffold_13049 11026442 104 - 25233164 ----------CCGUCGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCUGCC--UGAAGCUGCC---- ----------.....((((((....))).......((..((((.(((((((((((((.((((((..(((.....)))..)))).)).)))))))))..))))))--))..))))).---- ( -37.70, z-score = -2.60, R) >dp4.chrXR_group5 540780 110 + 740492 ----------AUGACGCAGGUGAAAACCCCAAAGUGCCUUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGCCGGUACAGCGGGUUACU ----------....(((.(((....))).....(((((...((.....(((((((((.((((((..(((.....)))..)))).)).)))))))))......))))))).)))....... ( -37.70, z-score = -1.40, R) >droPer1.super_58 215255 110 - 410386 ----------AUGACGCAGGUGAAAACCCCAAAGUGCCUUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGCCGGUACAGCGGGUUACU ----------....(((.(((....))).....(((((...((.....(((((((((.((((((..(((.....)))..)))).)).)))))))))......))))))).)))....... ( -37.70, z-score = -1.40, R) >consensus _____GCGCAAAGACGCAGGUGAAAACCCCAAAGUGCCCUAGGACAGUGCGAAGUGCUGAGUCAAGUGUCAACUGCAAAUGACAUUUGCAUUUCGCUGGCAGGGAUCAAGGGGGAG____ ..................(((....)))(((..((.(....).))...(((((((((.((((((..(((.....)))..)))).)).))))))))))))..................... (-26.15 = -26.16 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:33 2011