| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,316,902 – 9,317,017 |
| Length | 115 |
| Max. P | 0.645037 |
| Location | 9,316,902 – 9,317,017 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 87.73 |
| Shannon entropy | 0.21704 |
| G+C content | 0.50995 |
| Mean single sequence MFE | -39.22 |
| Consensus MFE | -29.76 |
| Energy contribution | -31.44 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.645037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9316902 115 + 24543557 UGUCUGUGUGUGCAAAGUGGCGGACAAAGGACCAGCAGACAUGAGUUCUCCGGACACAUGUCAAUUAAAUUUUGGGCUAUGGCUCGCUGGCUGGUUUUCCCGCUUUU-CCACUUCC .......(((.(.(((((((.(((.(..((.(((((.((((((.(((.....))).))))))...........((((....)))))))))))..).)))))))))).-)))).... ( -41.00, z-score = -2.18, R) >droEre2.scaffold_4784 21035667 113 - 25762168 --UGUGUGAGUUCAAAGGGCCGGACAAAGGACCAGAGGACAUGAGUUCUCCGGACACAUGUCAAUUAAAUUU-GGGCUAUGGCUCGCUGCCUUGUUUUGCCGCUUUUUCCGCUGCC --.(((.(((...(((((((..(((((.((..(((..((((((.(((.....))).))))))..........-((((....)))).))))))))))..))).)))))))))).... ( -35.10, z-score = -0.42, R) >droYak2.chr3L 21591572 103 - 24197627 --UGUGUGUGUUUG----------CAAAGGAGCAGCGGACAUGAGUUCUCCGGACACAUGUCAAUUAAAUUU-GGGCUAUGGCCCGCUGCCUGGUUUUUCCGCCUUUUCCACUGCC --...........(----------((..((((((((.((((((.(((.....))).))))))..........-((((....)))))))))..(((......)))...)))..))). ( -35.80, z-score = -1.78, R) >droSec1.super_0 1567197 114 + 21120651 UGUGUGUGUGUGCAAAGUGGCGGACAAAGGACCAGCAGACAUGAGUUCUCCGGACACAUGUCAAUUAAAUUU-GGGCUAUGGCUCGCUGGCUGGUUUUCCCGCUUUU-CCACUACC ...(((.(((.(.(((((((.(((.(..((.(((((.((((((.(((.....))).))))))..........-((((....)))))))))))..).)))))))))).-))))))). ( -42.10, z-score = -2.25, R) >droSim1.chr3L 8710573 114 + 22553184 UGUGUGUGUGUGCAAAGUGGCGGACAAAGGACCAGCAGACAUGAGUUCUCCGGACACAUGUCAAUUAAAUUU-GGGCUAUGGCUCGCUGGCUGGUUUUCCCGCUUUU-CCACUACC ...(((.(((.(.(((((((.(((.(..((.(((((.((((((.(((.....))).))))))..........-((((....)))))))))))..).)))))))))).-))))))). ( -42.10, z-score = -2.25, R) >consensus UGUGUGUGUGUGCAAAGUGGCGGACAAAGGACCAGCAGACAUGAGUUCUCCGGACACAUGUCAAUUAAAUUU_GGGCUAUGGCUCGCUGGCUGGUUUUCCCGCUUUU_CCACUACC .....(((.(...(((((((..(((...((.(((((.((((((.(((.....))).))))))...........((((....))))))))))).)))...)))))))..)))).... (-29.76 = -31.44 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:32 2011