| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,304,566 – 9,304,660 |
| Length | 94 |
| Max. P | 0.777446 |
| Location | 9,304,566 – 9,304,660 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 70.32 |
| Shannon entropy | 0.49747 |
| G+C content | 0.54860 |
| Mean single sequence MFE | -32.55 |
| Consensus MFE | -14.16 |
| Energy contribution | -14.42 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9304566 94 - 24543557 UUUGGCAUUUGGAAGCG-GGCAAC-AAAGGCU-CCAACUCAAUCCCAGGGAAGCCGCCGUGGGGAAUUCCGAUGGCUGGUUAGCCCAACCAACUAUC .((((...(((((.((.-(....)-....)))-))))..........(((.(((((((((.((.....)).))))).))))..)))..))))..... ( -31.00, z-score = -0.37, R) >droEre2.scaffold_4784 21023619 94 + 25762168 UUUGGCAUUUGGAAGCG-GGCAAC-AAAGGCU-UCAACUCAAUCCGAGGGAAGCCGCCGUGGGGAAUUCCGAUGGCUGGUUAGCCCAGCCAACUAUC .(((((....(....)(-((((((-...((((-((..(((.....))).))))))(((((.((.....)).)))))..))).)))).)))))..... ( -40.30, z-score = -3.11, R) >droSec1.super_0 1554375 87 - 21120651 -------UUUGGAAGCG-GGCAAC-AAAGGCU-CCAACUCAAUCCCAGGGAAGCCGCCGUGGGGAAUUUCGUUGGUUGGUUAGCCCAACCAAAUAUC -------.(((((.((.-(....)-....)))-)))).....(((((.((......)).))))).......((((((((.....))))))))..... ( -29.40, z-score = -1.16, R) >droSim1.chr3L 8696560 94 - 22553184 UUUGGCAUUUGGAAGCG-GGCAAC-AAAGGCU-CCAACUCAAUCCCAUGGAAGCCGCCGUGGGGAAUUCCGAUGGCUGGUUAGCCCAACCAACUAUC .((((.....(....)(-((((((-...((((-(((...........))).))))(((((.((.....)).)))))..))).))))..))))..... ( -31.60, z-score = -0.83, R) >droPer1.super_58 188554 79 - 410386 -------UUUGGCAGUGUGGCAGCAAAAAGCUGCCACUUCCAUUCCGUGGGGAAUGCCCCGG------CCACUGACUGCUUAA-CUGACUGAC---- -------...((((((((((((((.....)))))))).......(((.(((.....))))))------......))))))...-.........---- ( -31.50, z-score = -2.88, R) >dp4.chrXR_group5 515456 79 + 740492 -------UUUGGCAGUGUGGCAGCAAAAAGCUGCCACUUCCAUUCCGUGGGGAAUGCCCCGG------CCACUGACUGCUUAA-CUGACUGAC---- -------...((((((((((((((.....)))))))).......(((.(((.....))))))------......))))))...-.........---- ( -31.50, z-score = -2.88, R) >consensus _______UUUGGAAGCG_GGCAAC_AAAGGCU_CCAACUCAAUCCCAGGGAAGCCGCCGUGGGGAAUUCCGAUGGCUGGUUAGCCCAACCAACUAUC .........((((((.(((((........)))))).......(((((.((......)).)))))..))))).....(((((.....)))))...... (-14.16 = -14.42 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:31 2011