| Sequence ID | dm3.chr3L |
|---|---|
| Location | 9,297,102 – 9,297,193 |
| Length | 91 |
| Max. P | 0.761345 |
| Location | 9,297,102 – 9,297,193 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 77.10 |
| Shannon entropy | 0.42390 |
| G+C content | 0.42624 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -14.27 |
| Energy contribution | -14.25 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 9297102 91 + 24543557 CUAUAUGUCUAUUAAGUGUGGGCGUGGCAAAAUAGGCCAGUGAAAAAAAAAGACCAGAACAAGUAUAUAGCUACGCACAAAAGCUCGUUUG ....((((((((.....))))))))(((.......)))..................((((..(((......)))((......))..)))). ( -14.40, z-score = 0.84, R) >droSim1.chr3L 8686642 87 + 22553184 CUAUAUGUCUAUUUAGUGUGGGCGUGGCAAAAUAGGCCACUGGAAAAAGAA----AGAAAAAGUAUAUAGCCACGCUCACAAGCUCGUUUG ................((((((((((((...(((....(((..........----......))).))).)))))))))))).......... ( -21.39, z-score = -1.46, R) >droSec1.super_0 1545953 87 + 21120651 CUAUAUGUCUAUUUAGUGUGGGCGUGGCAAAAUAGGCCAGUGGAAAAAGAA----AGAAAAAGUAUAUAGCCACGCUCAAAAGCUCGUUUG ..............(((.((((((((((.......................----..............))))))))))...)))...... ( -18.59, z-score = -0.85, R) >droYak2.chr3L 21570992 81 - 24197627 AUGUAUGUCUGUGUAGUGUGGGCGUGGCCAAAUAGGCCU------GAAGAA----AGAAAAAGUAUAUAGCCACGCUCAAAUGCUCGUUUG ..........(.(((...((((((((((...(((.((((------......----)).....)).))).))))))))))..))).)..... ( -20.40, z-score = -1.14, R) >droEre2.scaffold_4784 21013796 80 - 25762168 CUAUGUGUCUGUGUAGUGUGGGCGUGGCCGAAUAGGCC-------GAAGUA----AGAAAAAGUAUAUAGCUGCGCUCAAAGGCUCGUUUG ..(((.((((........(((((((((((.....))))-------......----......(((.....)))))))))).)))).)))... ( -22.50, z-score = -1.31, R) >droAna3.scaffold_13337 19689859 87 + 23293914 AUGCAAGCGAGUGUAGUGGGGGCGUGGCCAAAUAGGCAAAAAAGUAGAAAG----AAAUAUAAAACAUAACUACGCUCAAAGACUCGUUUG ...(((((((((.(.....((((((((((.....)))......(((.....----...)))..........)))))))..).))))))))) ( -23.90, z-score = -3.20, R) >consensus CUAUAUGUCUAUGUAGUGUGGGCGUGGCAAAAUAGGCCA_UG_AAAAAGAA____AGAAAAAGUAUAUAGCCACGCUCAAAAGCUCGUUUG ..............(((.((((((((((.........................................))))))))))...)))...... (-14.27 = -14.25 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:13:30 2011